pythia_ppi/environment.yml at main · Wublab/pythia_ppi · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
name: pythia-ppi
channels:
  - pytorch
  - nvidia
  - defaults
  - conda-forge
  - https://repo.anaconda.com/pkgs/main
  - https://repo.anaconda.com/pkgs/r
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - biopython=1.84=py310hc51659f_0
  - blas=1.0=mkl
  - bottleneck=1.4.2=py310ha9d4c09_0
  - brotli-python=1.0.9=py310h6a678d5_8
  - bzip2=1.0.8=h5eee18b_6
  - ca-certificates=2024.11.26=h06a4308_0
  - certifi=2024.8.30=py310h06a4308_0
  - charset-normalizer=3.3.2=pyhd3eb1b0_0
  - cuda-cudart=11.8.89=0
  - cuda-cupti=11.8.87=0
  - cuda-libraries=11.8.0=0
  - cuda-nvrtc=11.8.89=0
  - cuda-nvtx=11.8.86=0
  - cuda-runtime=11.8.0=0
  - cuda-version=12.6=3
  - filelock=3.13.1=py310h06a4308_0
  - fsspec=2024.6.1=py310h06a4308_0
  - gmp=6.2.1=h295c915_3
  - gmpy2=2.1.2=py310heeb90bb_0
  - idna=3.7=py310h06a4308_0
  - intel-openmp=2023.1.0=hdb19cb5_46306
  - jinja2=3.1.4=py310h06a4308_1
  - ld_impl_linux-64=2.40=h12ee557_0
  - libcublas=11.11.3.6=0
  - libcufft=10.9.0.58=0
  - libcufile=1.11.1.6=0
  - libcurand=10.3.7.77=0
  - libcusolver=11.4.1.48=0
  - libcusparse=11.7.5.86=0
  - libffi=3.4.4=h6a678d5_1
  - libgcc=14.2.0=h77fa898_1
  - libgcc-ng=14.2.0=h69a702a_1
  - libgomp=14.2.0=h77fa898_1
  - libnpp=11.8.0.86=0
  - libnvjpeg=11.9.0.86=0
  - libstdcxx-ng=11.2.0=h1234567_1
  - libuuid=1.41.5=h5eee18b_0
  - lightning-utilities=0.11.9=pyhd8ed1ab_1
  - llvm-openmp=14.0.6=h9e868ea_0
  - markupsafe=2.1.3=py310h5eee18b_0
  - mkl=2023.1.0=h213fc3f_46344
  - mkl-service=2.4.0=py310h5eee18b_1
  - mkl_fft=1.3.11=py310h5eee18b_0
  - mkl_random=1.2.8=py310h1128e8f_0
  - mpc=1.1.0=h10f8cd9_1
  - mpfr=4.0.2=hb69a4c5_1
  - mpmath=1.3.0=py310h06a4308_0
  - ncurses=6.4=h6a678d5_0
  - networkx=3.3=py310h06a4308_0
  - numexpr=2.10.1=py310h3c60e43_0
  - numpy=1.26.4=py310h5f9d8c6_0
  - numpy-base=1.26.4=py310hb5e798b_0
  - openssl=3.0.15=h5eee18b_0
  - packaging=24.1=py310h06a4308_0
  - pandas=2.2.3=py310h6a678d5_0
  - pip=24.2=py310h06a4308_0
  - pysocks=1.7.1=py310h06a4308_0
  - python=3.10.16=he870216_1
  - python-dateutil=2.9.0post0=py310h06a4308_2
  - python-tzdata=2023.3=pyhd3eb1b0_0
  - python_abi=3.10=2_cp310
  - pytorch=2.5.1=py3.10_cuda11.8_cudnn9.1.0_0
  - pytorch-cuda=11.8=h7e8668a_6
  - pytorch-lightning=2.4.0=pyh101cb37_1
  - pytorch-mutex=1.0=cuda
  - pytz=2024.1=py310h06a4308_0
  - pyyaml=6.0.2=py310h5eee18b_0
  - readline=8.2=h5eee18b_0
  - requests=2.32.3=py310h06a4308_1
  - setuptools=75.1.0=py310h06a4308_0
  - six=1.16.0=pyhd3eb1b0_1
  - sqlite=3.45.3=h5eee18b_0
  - sympy=1.13.2=py310h06a4308_0
  - tbb=2021.8.0=hdb19cb5_0
  - tk=8.6.14=h39e8969_0
  - torchmetrics=1.4.0.post0=py310h06a4308_0
  - torchtriton=3.1.0=py310
  - tqdm=4.66.5=py310h2f386ee_0
  - typing-extensions=4.11.0=py310h06a4308_0
  - typing_extensions=4.11.0=py310h06a4308_0
  - tzdata=2024b=h04d1e81_0
  - urllib3=2.2.3=py310h06a4308_0
  - wheel=0.44.0=py310h06a4308_0
  - xz=5.4.6=h5eee18b_1
  - yaml=0.2.5=h7b6447c_0
  - zlib=1.2.13=h5eee18b_1