Made the module work with the proposed XENONnT Python 3.6 environment

Author: rynge

README.md

@@ -25,4 +25,10 @@ Just like utilix, this tool expects a configuration file named `$HOME/.xenonnt.c
     # sites to exclude (GLIDEIN_Site), comma seprated list
     exclude_sites = 
 
+## Environment
+
+Please use the Python3.6 XENONnT environment. On the OSG submit hosts, this can be set up by sourcing:
+
+    . /cvmfs/xenon.opensciencegrid.org/testing/releases/latest/setup.sh
+
 

outsource/Outsource.py

@@ -78,7 +78,7 @@ def submit_workflow(self):
 
         # does workflow already exist?
         if os.path.exists(self._workflow_dir()):
-            logger.error("Workflow already exists at {path}. Exiting.".format(path=self._workflow_dir()))
+            logger.error("Workflow already exists at {path} . Exiting.".format(path=self._workflow_dir()))
             return
 
         # work dirs

outsource/workflow/run-pax.sh

@@ -11,26 +11,38 @@ export send_updates=$7
 
 start_dir=$PWD
 
-osg_software=/cvmfs/oasis.opensciencegrid.org/mis/osg-wn-client/3.4/3.4.22/el7-x86_64
-anaconda_env=/cvmfs/xenon.opensciencegrid.org/releases/anaconda/2.4/bin
-rucio_base=/cvmfs/xenon.opensciencegrid.org/software/rucio-py27/1.8.3
-
-# OSG env for gfal
-source $osg_software/setup.sh
-export GFAL_CONFIG_DIR=$OSG_LOCATION/etc/gfal2.d
-export GFAL_PLUGIN_DIR=$OSG_LOCATION/usr/lib64/gfal2-plugins/
-
-# Rucio env
-export RUCIO_HOME=$rucio_base/rucio/
-export RUCIO_ACCOUNT=xenon-analysis
-export PYTHONPATH=$rucio_base/lib/python2.7/site-packages:$PYTHONPATH
-export PATH=$rucio_base/bin:$PATH
-
 # set GLIDEIN_Country variable if not already
 if [[ -z "$GLIDEIN_Country" ]]; then
     export GLIDEIN_Country="US"
 fi
 
+if [ -e /image-build-info.txt ]; then
+    echo
+    echo "Running in image with build info:"
+    cat /image-build-info.txt
+    echo
+fi
+
+. /opt/XENONnT/setup.sh
+
+### We should not need these anymore as it is part of the container we running in
+###
+### osg_software=/cvmfs/oasis.opensciencegrid.org/mis/osg-wn-client/3.4/3.4.22/el7-x86_64
+anaconda_env=/cvmfs/xenon.opensciencegrid.org/releases/anaconda/2.4/bin
+### rucio_base=/cvmfs/xenon.opensciencegrid.org/software/rucio-py27/1.8.3
+### 
+### # OSG env for gfal
+### source $osg_software/setup.sh
+### export GFAL_CONFIG_DIR=$OSG_LOCATION/etc/gfal2.d
+### export GFAL_PLUGIN_DIR=$OSG_LOCATION/usr/lib64/gfal2-plugins/
+### 
+### # Rucio env
+### export RUCIO_HOME=$rucio_base/rucio/
+#export PYTHONPATH=$rucio_base/lib/python2.7/site-packages:$PYTHONPATH
+#export PATH=$rucio_base/bin:$PATH
+
+export RUCIO_ACCOUNT=xenon-analysis
+
 data_downloaded=0
 
 # If data is in Rucio, find the rse to use
@@ -95,7 +107,7 @@ if [[ $data_downloaded == 0 ]]; then
 fi
 
 # post-transfer, we can set up the env for pax - but first save/clear some old stuff
-old_path=$PATH
+iold_path=$PATH
 export PATH=/usr/bin:/bin
 old_ld_library_path=$LD_LIBRARY_PATH
 unset LD_LIBRARY_PATH