adding noise

Author: Titus Jung

RawConverterDotNetCore/.gitignore

@@ -1,3 +1,5 @@
 /test_data/
 /bin/
 /obj/
+/out/
+.zip

RawConverterDotNetCore/MassSpec/Ion.cs

@@ -25,6 +25,9 @@ public class Ion : ICloneable
         public double Resolution { get; set; }
         public double Mass { get; private set; }
 
+        public double NoiseBaseline {get; private set; }
+        
+        public double Noise {get; private set; }
         /// <summary>
         /// Constructor
         /// </summary>
@@ -53,6 +56,17 @@ public Ion(double mz, double intensity, int charge, double resolution)
             CalculateMass();
         }
 
+        public Ion(double mz, double intensity, int charge, double resolution, double noisebaseline, double noise)
+        {
+            MZ = mz;
+            Intensity = intensity;
+            Charge = charge;
+            Resolution = resolution;
+            NoiseBaseline = noisebaseline;
+            Noise = noise; 
+            CalculateMass();
+        }
+
         public int Compare(Ion i1, Ion i2)
         {
             if (i1.MZ < i2.MZ)

RawConverterDotNetCore/README.md

@@ -13,8 +13,9 @@ sudo rpm -Uvh https://packages.microsoft.com/config/centos/7/packages-microsoft-
 sudo yum install dotnet-sdk-3.1
 ```
 
+
 ## Run
 ```
-RawConverterDotnetCore test_raw/FLI_180508_JMK_Biognosys_new_prep_Brain_TMT10_10fr_HpH_fr10.raw --ms1 --ms2 --ms3
+binb/debug/RawConverterDotnetCore test_raw/FLI_180508_JMK_Biognosys_new_prep_Brain_TMT10_10fr_HpH_fr10.raw --ms1 --ms2 --ms3
 
 ```

RawConverterDotNetCore/RawConverterDotnetCore.csproj

@@ -3,6 +3,7 @@
     <OutputType>Exe</OutputType>
     <TargetFramework>netcoreapp3.0</TargetFramework>
     <AllowUnsafeBlocks>true</AllowUnsafeBlocks>
+    <RuntimeIdentifiers>win10-x64;linux-x64</RuntimeIdentifiers>
   </PropertyGroup>
   <ItemGroup>
     <PackageReference Include="MarkerMetro.Unity.Ionic.Zlib" Version="2.0.0.14" />
@@ -19,4 +20,4 @@
     <Content  Include="AveragineTable.txt" CopyToOutputDirectory="Always" />
     <Content  Include="AveragineTable.txt" CopyToPublishDirectory="Always" />
   </ItemGroup>
-</Project>
+</Project>

RawConverterDotNetCore/build.sh

@@ -1,5 +1,11 @@
+rm -r obj/
+rm -r out/*
 dotnet build ./RawConverterDotnetCore.csproj
 
+rm -r ./out/RawConverterDotNetCoreWindows;
+rm -r ./out/RawConverterDotNetCoreLinux;
 
-dotnet publish -r linux-x64 --configuration Release ./RawConverterDotnetCore.csproj /property:GenerateFullPaths=true
+dotnet publish -c Release --self-contained true -r win10-x64 -o ./out/RawConverterDotNetCoreWindows/;
+dotnet publish -r linux-x64 -o ./out/RawConverterDotNetCoreLinux/; 
+#dotnet publish --self-contained -r linux-x64 --configuration Release ./RawConverterDotnetCore.csproj /property:GenerateFullPaths=true -o out
 #cp Common/*so bin/Release/netcoreapp3.0/