Warning messages: 1: `aes_()` was deprecated in ggplot2 3.0.0. 2: In fortify(data, ...) : Arguments in `...` must be used. ✖ Problematic arguments:

[92tianyu]

p <- ggtree(tree, size = 0.5, ladderize = F)
Warning messages:
1: aes_() was deprecated in ggplot2 3.0.0.
ℹ Please use tidy evaluation idioms with aes()
ℹ The deprecated feature was likely used in the ggtree package.
Please report the issue at https://github.com/YuLab-SMU/ggtree/issues.
This warning is displayed once every 8 hours.
Call lifecycle::last_lifecycle_warnings() to see where this warning was
generated.
2: In fortify(data, ...) :
Arguments in ... must be used.
✖ Problematic arguments:
• as.Date = as.Date
• yscale_mapping = yscale_mapping
• right = right
• hang = hang
• size = 0.5
ℹ Did you misspell an argument name?
3: Using size aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use linewidth instead.
ℹ The deprecated feature was likely used in the ggtree package.
Please report the issue at https://github.com/YuLab-SMU/ggtree/issues.
This warning is displayed once every 8 hours.
Call lifecycle::last_lifecycle_warnings() to see where this warning was
generated.

p
packageVersion("ggtree")
[1] ‘3.10.1’
packageVersion("ggplot2")
[1] ‘4.0.1’

[brj1]

Your ggtree package is out of date. Run the following to update it:

BiocManager::install("ggtree")