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Install ggtree is easy, follow the guide in the page, http://bioconductor.org/packages/ggtree/:
ggtree
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ggtree")
In Linux or Mac (if your R was install via brew), you may have problems when compiling some of the dependent packages (e.g. EBImage).
R
brew
EBImage
If you have problems, you can contact me. I will be glad if I can help.
When the problem was solved, I will update this page to record how it was solved.
If you solved your installation problem, please help editing this page. It will help new users.