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ggtree installation

Guangchuang Yu edited this page Apr 21, 2016 · 9 revisions

Install ggtree is easy, follow the guide in the page, http://bioconductor.org/packages/ggtree/:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ggtree")

In Linux or Mac (if your R was install via brew), you may have problems when compiling some of the dependent packages (e.g. EBImage).

If you have problems, you can contact me. I will be glad if I can help.

When the problem was solved, I will update this page to record how it was solved.

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  • Operating System
  • package manager
  • package name
  • R package

Different Linux distributions use different package manager (e.g. yum and apt) and package name may different slightly, so these information are needed for users to install dependent library (e.g. libtiff) for R package.

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