update

GuangchuangYu · GuangchuangYu · commit 5503103415f1 · 2025-11-15T21:52:47.000+08:00
diff --git a/content/contribution-knowledge-mining.md b/content/contribution-knowledge-mining.md
@@ -213,6 +213,7 @@ Our innovation lies in proposing a novel method for characterizing cell function
 
 <font size="3">
 
++ __G Yu__<sup>\*</sup>. [Background bias in functional enrichment analysis: Insights from clusterProfiler](https://doi.org/10.59717/j.xinn-life.2025.100181). __*The Innovation Life*__. 2026, 4(1):100181.
 + __G Yu__<sup>\*</sup>. [Thirteen years of clusterProfiler](https://doi.org/10.1016/j.xinn.2024.100722). __*The Innovation*__. 2024, 5(6):100722.
 + S Xu<sup>#</sup>, E Hu<sup>#</sup>, Y Cai<sup>#</sup>, Z Xie<sup>#</sup>, X Luo<sup>#</sup>, L Zhan, W Tang, Q Wang, B Liu, R Wang, W Xie, T Wu, L Xie, __G Yu__<sup>\*</sup>. [Using clusterProfiler to characterise Multi-Omics Data](https://www.nature.com/articles/s41596-024-01020-z). __*Nature Protocols*__. 2024, 19(11):3292-3320. 
 + Q Wang<sup>#</sup>, M Li<sup>#</sup>, T Wu, L Zhan, L Li, M Chen, W Xie, Z Xie, E Hu, S Xu, __G Yu__<sup>\*</sup>. [Exploring epigenomic datasets by ChIPseeker](https://doi.org/10.1002/cpz1.585). __*Current Protocols*__, 2022, 2(10): e585. 
diff --git a/content/news.md b/content/news.md
@@ -3,7 +3,20 @@ slug: news
 title: News
 ---
 
+<strong><font color="green">Nov 2025</font></strong>: 余光创入选科睿唯安2025年度“全球高被引科学家”。
+
+<strong><font color="green">Nov 2025</font></strong>: [Comparison of Illumina NovaSeq 6000 and GeneMind SURFSeq 5000 platforms for single‐cell spatial transcriptomics of mouse brain and lung](https://doi.org/10.1002/inmd.70067) 文章在***Interdisciplinary Medicine***期刊发表，恭喜王倩雯、邓琳和徐双斌。
++ [Early View | 南方医科大学余光创教授团队 两种测序平台在小鼠脑和肺单细胞空间转录组学研究中的比较](https://mp.weixin.qq.com/s/BVtZoeWu4Ysq1ouGM8aUJA)
+
+<strong><font color="green">Oct 2025</font></strong>: 余光创获得2025年第一季度威立Wiley中国高贡献作者奖。
+
+<strong><font color="green">Oct 2025</font></strong>: [Background bias in functional enrichment analysis: Insights from clusterProfiler](https://doi.org/10.59717/j.xinn-life.2025.100181) 文章在***The Innovation Life***期刊发表。
++ [The Innovation Life | 功能富集分析中的背景偏差：来自clusterProfiler的见解](https://mp.weixin.qq.com/s/Nnlziwyl6BjxrNRL_DhmmA)
+
+<strong><font color="green">Oct 2025</font></strong>: [ALCAM-CD6 axis suppression: a key determinant of immune-mediated metastasis recurrence in stage III non-small cell lung cancer](https://jitc.bmj.com/content/13/10/e010416) 文章在***Journal for ImmunoTherapy of Cancer***期刊发表，恭喜少迪。
+
 <strong><font color="green">Sep 2025</font></strong>: [生物科学“101计划”核心教材出版发行](https://mp.weixin.qq.com/s/fXn9XtfOMBC2vIMXvuSP6A)。余光创作为编委，参与两本教材的编撰：《生物信息学》及配套实验课程《生物信息学实验》。
++ [参编101教材《生物信息学》发行](https://mp.weixin.qq.com/s/eI6qpdYqKM2XbB8Bs73TMQ)
 
 <strong><font color="green">Sep 2025</font></strong>: [余光创](https://topresearcherslist.com/Home/Profile/552444) 入选全球前2%顶尖科学家榜单
 + <strong>终身科学影响力</strong>（career-long impact）排行榜：全球排名15972
@@ -61,6 +74,7 @@ title: News
 
 <strong><font color="green">Jan 2025</font></strong>: [Scalable method for exploring phylogenetic placement uncertainty with custom visualizations using treeio and ggtree](https://doi.org/10.1002/imt2.269) 文章在***iMeta***期刊发表，恭喜陈玫君和徐双斌。
 + [iMeta | 南医大余光创组-使用treeio和ggtree探索系统发育位置数据](https://mp.weixin.qq.com/s/lwULobkiuR6vBqSbGbV2dQ)
++ [文章发表：使用treeio和ggtree探索Phylogenetic placement数据](https://mp.weixin.qq.com/s/sowOS9LTP_whN3xv01SJPg)
 
 <strong><font color="green">Jan 2025</font></strong>: 《Using clusterProfiler to characterize multiomics data》入选ESI热点论文 ([Top 0.1%](https://yulab-smu.top/images/Screenshot_20250112163909.png))。
 
@@ -231,8 +245,6 @@ title: News
 
 <strong><font color="green">Jul 2023</font></strong>: 博士后徐双斌在第一届CGM线下沙龙做学术报告。
 
-<strong><font color="green">Jul 2023</font></strong>: 佛山市第一人民医院郑慧敏博士后到本课题组进修。
-
 <strong><font color="green">Jun 2023</font></strong>: 🌠🎉 恭喜唐文丽荣获南方医科大学2023届“优秀毕业研究生”荣誉称号。
 
 <strong><font color="green">Jun 2023</font></strong>: 📝🎉 通过微生物组预测代谢物的软件包*MMINP*发表于***Gut Microbes***期刊 (Links: [article](https://dx.doi.org/10.1080/19490976.2023.2223349)，恭喜唐文丽
diff --git a/content/publications.md b/content/publications.md
@@ -34,15 +34,18 @@ title: Publications
 </tr>
 </table>
 
+## <i class="fa fa-calendar fa-1x" aria-hidden="true"></i> 2026 {#year-2026}
 
++ B Liu, Y Liu, S Xu, Q Wu, D Wu, Y Liao, Y Mai, M Zheng, S Wang, L Zhan, Y Chen, Z Huang, X Luo, Z Xie, X Pan, __G Yu__<sup>\*</sup>, L Xie<sup>\*</sup>. [EasyMultiProfiler: An Efficient Multi-Omics Data Integration and Analysis Workflow for Microbiome Research](https://www.sciengine.com/SCLS/doi/10.1007/s11427-025-3035-0). __*SCIENCE CHINA Life Sciences*__. 2026, accepted.
++ __G Yu__<sup>\*</sup>. [Background bias in functional enrichment analysis: Insights from clusterProfiler](https://doi.org/10.59717/j.xinn-life.2025.100181). __*The Innovation Life*__. 2026, 4(1):100181.
 
 
 ## <i class="fa fa-calendar fa-1x" aria-hidden="true"></i> 2025 {#year-2025}
 
 + Q Wang<sup>#</sup>, L Deng<sup>#</sup>, S Xu<sup>#</sup>, P Guo, H Zhu, H Ge, Y Gong, G Du, K Huang, C Su, R Wang, Y Qiu<sup>\*</sup>, __G Yu__<sup>\*</sup>. [Comparison of Illumina NovaSeq 6000 and GeneMind SURFSeq 5000 platforms for single‐cell spatial transcriptomics of mouse brain and lung](https://doi.org/10.1002/inmd.70067). __*Interdisciplinary Medicine*__. 2025, e70067.
 + Y Peng, S Jiang, Y Song, P Luo, J Li, D Hu, JG Zhou, __G Yu__<sup>\*</sup>, T Xu<sup>\*</sup>, S Wang<sup>\*</sup>. [ggalign: Bridging the Grammar of Graphics and Biological Multilayered Complexity](https://advanced.onlinelibrary.wiley.com/doi/10.1002/advs.202507799). __*Advanced Science*__. 2025, e07799.
-+ B Liu, Y Liu, S Xu, Q Wu, D Wu, Y Liao, Y Mai, M Zheng, S Wang, L Zhan, Y Chen, Z Huang, X Luo, Z Xie, X Pan, __G Yu__<sup>\*</sup>, L Xie<sup>\*</sup>. [EasyMultiProfiler: An Efficient Multi-Omics Data Integration and Analysis Workflow for Microbiome Research](https://www.sciengine.com/SCLS/doi/10.1007/s11427-025-3035-0). __*SCIENCE CHINA Life Sciences*__. 2025, accepted.
-+ P Li<sup>#</sup>, L Xie<sup>#</sup>, H Zheng<sup>#</sup>, Y Feng<sup>#</sup>, F Mai, W Tang, J Wang, Z Lan, S Lv, T Jayawardana, S Koentgen, S Xu, Z Wan, Y Chen, H Xu, S Shen, F Zhang, Y Yang, G Hold, F He<sup>\*</sup>, E M. El-Omar<sup>\*</sup>, __G Yu__<sup>\*</sup>, X Chen<sup>\*</sup>. [Gut microbial-derived 3,4-dihydroxyphenylacetic acid ameliorates reproductive phenotype of polycystic ovary syndrome](https://onlinelibrary.wiley.com/doi/10.1002/imt2.70065). __*iMeta*__. 2025, e70065.
++ S Wen<sup>#</sup>, X Du<sup>#</sup>, M Zhu<sup>#</sup>, C Huang, Z Lin, M Li, B Hu, X Wang, F Jiang, G Zhou, W Zhu, __G Yu__<sup>\*</sup>, C Xu<sup>\*</sup>, B Shen<sup>\*</sup>. [ALCAM-CD6 axis suppression: a key determinant of immune-mediated metastasis recurrence in stage III non-small cell lung cancer](https://jitc.bmj.com/content/13/10/e010416). __*Journal for ImmunoTherapy of Cancer*__. 2025, 13(10):e010416.
++ P Li<sup>#</sup>, L Xie<sup>#</sup>, H Zheng<sup>#</sup>, Y Feng<sup>#</sup>, F Mai, W Tang, J Wang, Z Lan, S Lv, T Jayawardana, S Koentgen, S Xu, Z Wan, Y Chen, H Xu, S Shen, F Zhang, Y Yang, G Hold, F He<sup>\*</sup>, E M. El-Omar<sup>\*</sup>, __G Yu__<sup>\*</sup>, X Chen<sup>\*</sup>. [Gut microbial-derived 3,4-dihydroxyphenylacetic acid ameliorates reproductive phenotype of polycystic ovary syndrome](https://onlinelibrary.wiley.com/doi/10.1002/imt2.70065). __*iMeta*__. 2025, 4(5):e70065.
 + X Lu, K Li, Z Li, A Lin, L Zhao, R Shen, Z Xu, J Gao, D Lv, Y Zhang, T Ye, J Shen, Y Chen, H Huang, Z Hao, D Zeng, H Wang, S Guo, W Wang, Y Xiong, Y Li, H Li, J Gao, Q Liu, B Wei, J Shi, S Cheng, G Li, Y Tang, E Lin, H Xu, G Feng, Y He, Y Sun, X Liu, Y Wang, W Song, J Song, S Tian, Y Zhang, J Zhang, Z Xu, C Song, Y Zhang, H Wu, C Gao, E Hu, C Yang, J Lou, D Wang, X Wang, P Luo<sup>\*</sup>, __G Yu__<sup>\*</sup>, Y Ge<sup>\*</sup>. [FigureYa: A Standardized Visualization Framework for Enhancing Biomedical Data Interpretation and Research Efficiency](https://doi.org/10.1002/imm3.70005). __*iMetaMed*__. 2025, 1(1):e70005. [Cover story](https://onlinelibrary.wiley.com/cms/asset/242e8b33-73e2-448a-bacc-e68837e3437b/default_cover.jpg)
 + S Xu<sup>#</sup>, Q Wang<sup>#</sup>, S Wen<sup>#</sup>, J Li<sup>#</sup>, N He<sup>#</sup>, M Li, T Hackl, R Wang, D Zeng, S Wang, S Li, CH Gao, L Zhou, S Tao, Z Xie, L Deng, __G Yu__<sup>\*</sup>. [aplot: Simplifying the creation of complex graphs to visualize associations across diverse data types](https://doi.org/10.1016/j.xinn.2025.100958). __*The Innovation*__. 2025, 6(9):100958. (封面导读：Complex composite graphics)<!-- 业绩报到这里 -->
 + Y Gao<sup>#</sup>, B Li<sup>#</sup>, Y Jin<sup>#</sup>, J Cheng<sup>#</sup>, W Tian, L Ying, L Hong, S Xin, B Lin, C Liu, X Sun, J Zhang, H Zhang, J Xie, X Deng, X Dai, L Liu, Y Zheng, P Zhao, __G Yu__<sup>\*</sup>, W Fang<sup>\*</sup>, X Bao<sup>\*</sup>. [Spatial multi-omics profiling of breast cancer oligo-recurrent lung metastasis](https://doi.org/10.1038/s41388-025-03388-y). __*Oncogene*__. 2025, 44(27):2268-2282. 
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