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‎content/books.md‎

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+ 陈铭，吕晖. 生物信息学（生物科学“101计划”核心教材）. __*高等教育出版社*__, 2025. ISBN: [9787040641318](https://www.hep.com.cn/book/show/c5d374b3-332b-472f-9d76-2e36feecfef1)
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+ 沈百荣，杨恩策. 基于理工信的医学数据采集与分析（基础医学“101计划”核心教材）. __*北京大学医学出版社*__, 2024. ISBN: [9787565931987](https://www.pumpedu.com/en-shop/7263.html)
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+ __余光创（著）__, 李林, 罗晓（译）. R实战：系统发育树的数据集成操作及可视化. __*电子工业出版社*__, 2023. ISBN: [9787121451829](https://u.jd.com/uu7G4qC)
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+ __G Yu__. Data Integration, Manipulation and Visualization of Phylogenetic Treess (1st edition). __*Chapman and Hall/CRC*__, 2023. doi: [10.1201/9781003279242](https://doi.org/10.1201/9781003279242), ISBN: [9781032233574](https://www.amazon.com/Integration-Manipulation-Visualization-Phylogenetic-Computational/dp/1032233575)

‎content/members.md‎

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<a href="https://github.com/xiangpin" aria-label="Github">
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<td style="border:none;"><img src="/images/icon-girl.png" width='150px'></td>
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<td style="border:none;"><strong>Jingyi Chen<br>
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Postdoc</strong><br>
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<td style="border:none;"><img src="/images/members/zhy.png" width='150px'></td>
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<td style="border:none;"><strong>Hongyuan Zhu<br>
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PhD Student</strong><br>
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<td style="border:none;"><strong>Yonghe Xia<br>
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PhD Student</strong>
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<a href="https://github.com/MingLi-929" aria-label="Github">
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<td style="border:none;"><strong>Rui Wang<br>
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<td style="border:none;"><strong>Lin Deng<br>
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<td style="border:none;"><strong>Yufan Liao<br>
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<td style="border:none;"><img src="/images/members/tsg.jpg" width='150px'></td>
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<td style="border:none;"><strong>Shaoguo Tao<br>
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<td style="border:none;"><strong>Shutong Lin<br>
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<td style="border:none;"><img src="/images/members/yt.jpg" width='150px'></td>
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<td style="border:none;"><strong>Tian Yang<br>
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<td style="border:none;"><img src="/images/members/yzl.jpg" width='150px'></td>
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<td style="border:none;"><strong>Zelin Yang<br>
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临床8年制</strong>
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‎content/news.md‎

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<strong><font color="green">Sep 2025</font></strong>: [生物科学“101计划”核心教材出版发行](https://mp.weixin.qq.com/s/fXn9XtfOMBC2vIMXvuSP6A)。余光创作为编委，参与两本教材的编撰：《生物信息学》及配套实验课程《生物信息学实验》。
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<strong><font color="green">Sep 2025</font></strong>: [余光创](https://topresearcherslist.com/Home/Profile/552444) 入选全球前2%顶尖科学家榜单
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+ <strong>终身科学影响力</strong>（career-long impact）排行榜：全球排名15972
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+ <strong>年度科学影响力</strong>（single recent year impact）排行榜：全球排名401，中国排名14
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<strong><font color="green">Sep 2025</font></strong>: 徐双斌入选全球前2%顶尖科学家榜单
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<strong><font color="green">Sep 2025</font></strong>：[FigureYa: A Standardized Visualization Framework for Enhancing Biomedical Data Interpretation and Research Efficiency](https://doi.org/10.1002/imm3.70005) 以**封面文章**在***iMetaMed***期刊发表。
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+ [iMetaMed | 大连医科大学葛瑛-FigureYa：一个用于提升生物医学数据解读与研究效率的标准化可视化框架](https://mp.weixin.qq.com/s/P_l9X3wUCgmjt4Z59vC-LA)
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+ [FigureYa更新啦！借助学术的力量](https://mp.weixin.qq.com/s/CUqkZxITku940oqBJveFDg?click_id=15)
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<strong><font color="green">Sep 2025</font></strong>：[ggalign: Bridging the Grammar of Graphics and Biological Multilayered Complexity](https://advanced.onlinelibrary.wiley.com/doi/10.1002/advs.202507799)文章在***Advanced Science***期刊发表。
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+ [王诗翔/徐涛/余光创等：ggalign让复杂多组学数据可视化一目了然](https://rbase.chinagut.cn/base/article/8259f0b157fa46698c9f90bca6c1a5e9)
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+ [Adv Sci︱王诗翔/徐涛/余光创团队提出一个组合式可视化框架，实现从多尺度多维度揭示跨生物学层级的潜在联系](https://mp.weixin.qq.com/s/KCt2aQJJ5d3GFC8I69H6nw)
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<strong><font color="green">Sep 2025</font></strong>：交互式火山图可视化包，[ivolcano](https://cran.r-project.org/package=ivolcano)在CRAN发布。
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<strong><font color="green">Sep 2025</font></strong>：欢迎新同学夏永和（博士生，西湖大学）、林树彤、黄晶晶、杨天和杨泽林（临床8年制）。
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<strong><font color="green">Sep 2025</font></strong>：欢迎新同学：陈菁怡（博士后）、夏永和（博士生，西湖大学）、林树彤、黄晶晶、杨天和杨泽林（临床8年制）。
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<strong><font color="green">Aug 2025</font></strong>：据AD Scientific Index排名系统数据，[余光创的引用量：位居世界排名7895，中国排名237，南方医科大学排名第1](https://yulab-smu.top/images/adscentificindex2025.png)，近5年被引用57697次。
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‎content/publications.md‎

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## <i class="fa fa-calendar fa-1x" aria-hidden="true"></i> 2025 {#year-2025}
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+ X Lu, K Li, Z Li, A Lin, L Zhao, R Shen, Z Xu, J Gao, D Lv, Y Zhang, T Ye, J Shen, Y Chen, H Huang, Z Hao, D Zeng, H Wang, S Guo, W Wang, Y Xiong, Y Li, H Li, J Gao, Q Liu, B Wei, J Shi, S Cheng, G Li, Y Tang, E Lin, H Xu, G Feng, Y He, Y Sun, X Liu, Y Wang, W Song, J Song, S Tian, Y Zhang, J Zhang, Z Xu, C Song, Y Zhang, H Wu, C Gao, E Hu, C Yang, J Lou, D Wang, X Wang, P Luo<sup>\*</sup>, __G Yu__<sup>\*</sup>, Y Ge<sup>\*</sup>. [FigureYa: A Standardized Visualization Framework for Enhancing Biomedical Data Interpretation and Research Efficiency](https://doi.org/10.1002/imm3.70005). __*iMetaMed*__. 2025, e70005. [Cover story](https://onlinelibrary.wiley.com/cms/asset/242e8b33-73e2-448a-bacc-e68837e3437b/default_cover.jpg)
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+ Y Peng, S Jiang, Y Song, P Luo, J Li, D Hu, JG Zhou, __G Yu__<sup>\*</sup>, T Xu<sup>\*</sup>, S Wang<sup>\*</sup>. [ggalign: Bridging the Grammar of Graphics and Biological Multilayered Complexity](https://advanced.onlinelibrary.wiley.com/doi/10.1002/advs.202507799). __*Advanced Science*__. 2025, accepted.
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+ B Liu, Y Liu, S Xu, Q Wu, D Wu, Y Liao, Y Mai, M Zheng, S Wang, L Zhan, Y Chen, Z Huang, X Luo, Z Xie, X Pan, __G Yu__<sup>\*</sup>, L Xie<sup>\*</sup>. [EasyMultiProfiler: An Efficient Multi-Omics Data Integration and Analysis Workflow for Microbiome Research](https://www.sciengine.com/SCLS/doi/10.1007/s11427-025-3035-0). __*SCIENCE CHINA Life Sciences*__. 2025, accepted.
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+ P Li<sup>#</sup>, L Xie<sup>#</sup>, H Zheng<sup>#</sup>, Y Feng<sup>#</sup>, F Mai, W Tang, J Wang, Z Lan, S Lv, T Jayawardana, S Koentgen, S Xu, Z Wan, Y Chen, H Xu, S Shen, F Zhang, Y Yang, G Hold, F He<sup>\*</sup>, E M. El-Omar<sup>\*</sup>, __G Yu__<sup>\*</sup>, X Chen<sup>\*</sup>. [Gut microbial-derived 3,4-dihydroxyphenylacetic acid ameliorates reproductive phenotype of polycystic ovary syndrome](https://onlinelibrary.wiley.com/doi/10.1002/imt2.70065). __*iMeta*__. 2025, e70065.
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+ Y Gao<sup>#</sup>, B Li<sup>#</sup>, Y Jin<sup>#</sup>, J Cheng<sup>#</sup>, W Tian, L Ying, L Hong, S Xin, B Lin, C Liu, X Sun, J Zhang, H Zhang, J Xie, X Deng, X Dai, L Liu, Y Zheng, P Zhao, __G Yu__<sup>\*</sup>, W Fang<sup>\*</sup>, X Bao<sup>\*</sup>. [Spatial multi-omics profiling of breast cancer oligo-recurrent lung metastasis](https://doi.org/10.1038/s41388-025-03388-y). __*Oncogene*__. 2025, 44(27):2268-2282.
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+ S Xu<sup>#</sup>, Q Wang<sup>#</sup>, S Wen<sup>#</sup>, J Li<sup>#</sup>, N He<sup>#</sup>, M Li, T Hackl, R Wang, D Zeng, S Wang, S Li, CH Gao, L Zhou, S Tao, Z Xie, L Deng, __G Yu__<sup>\*</sup>. [aplot: Simplifying the creation of complex graphs to visualize associations across diverse data types](https://doi.org/10.1016/j.xinn.2025.100958). __*The Innovation*__. 2025, 6(9):100958. (封面导读：Complex composite graphics)
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+ P Li<sup>#</sup>, L Xie<sup>#</sup>, H Zheng<sup>#</sup>, Y Feng<sup>#</sup>, F Mai, W Tang, J Wang, Z Lan, S Lv, T Jayawardana, S Koentgen, S Xu, Z Wan, Y Chen, H Xu, S Shen, F Zhang, Y Yang, G Hold, F He<sup>\*</sup>, E M. El-Omar<sup>\*</sup>, __G Yu__<sup>\*</sup>, X Chen<sup>\*</sup>. [Gut microbial-derived 3,4-dihydroxyphenylacetic acid ameliorates reproductive phenotype of polycystic ovary syndrome](https://onlinelibrary.wiley.com/doi/10.1002/imt2.70065). __*iMeta*__. 2025, e70065.<!-- 业绩报到这里 -->
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+ Y Gao<sup>#</sup>, B Li<sup>#</sup>, Y Jin<sup>#</sup>, J Cheng<sup>#</sup>, W Tian, L Ying, L Hong, S Xin, B Lin, C Liu, X Sun, J Zhang, H Zhang, J Xie, X Deng, X Dai, L Liu, Y Zheng, P Zhao, __G Yu__<sup>\*</sup>, W Fang<sup>\*</sup>, X Bao<sup>\*</sup>. [Spatial multi-omics profiling of breast cancer oligo-recurrent lung metastasis](https://doi.org/10.1038/s41388-025-03388-y). __*Oncogene*__. 2025, 44(27):2268-2282.
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+ Q Wang, H Zhu, L Deng, S Xu, W Xie, M Li, R Wang, L Tie, L Zhan, __G Yu__<sup>\*</sup>. [Spatial Transcriptomics: Biotechnologies, Computational Tools, and Neuroscience Applications](https://doi.org/10.1002/smtd.202401107). __*Small Methods*__. 2025, 9(5):2401107. [卷首插图文章Frontispiece](https://onlinelibrary.wiley.com/doi/10.1002/smtd.202570033)
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+ Y Tu<sup>#\*</sup>, S Xu<sup>#</sup>, H Shu, X Wang, W Li, __G Yu__<sup>\*</sup>, Li He<sup>\*</sup>. [16S rRNA Sequencing Reveals Dysbiosis of Skin Microbiome Associated With Disease Severity in Chronic Actinic Dermatitis](https://onlinelibrary.wiley.com/doi/full/10.1111/phpp.70022). __*Photodermatology, Photoimmunology & Photomedicine*__. 2025, 41(3):e70022.
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+ M Chen<sup>#</sup>, X Luo<sup>#</sup>, S Xu<sup>#</sup>, L Li, J Li, Z Xie, Q Wang, Y Liao, B Liu, W Liang, K Mo, Q Song, X Chen<sup>\*</sup>, TTY Lam<sup>\*</sup>, __G Yu__<sup>\*</sup>. [Scalable method for exploring phylogenetic placement uncertainty with custom visualizations using treeio and ggtree](https://doi.org/10.1002/imt2.269). __*iMeta*__. 2025, 4(1):e269.

‎static/images/members/yzl.jpg‎

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