mapseq-processing/pyproject.toml at main · ZadorLaboratory/mapseq-processing · GitHub

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[build-system]
requires = ["setuptools >= 77.0.3"]
build-backend = "setuptools.build_meta"

[project]
name = "mapseq-processing"
version = "1.0.0"

description = "Data processing for MAPseq"
readme = "README.md"
classifiers = [
    "Programming Language :: Python :: 3",
    "Operating System :: OS Independent",
]
license = "BSD-3-Clause"
license-files = ["LICEN[CS]E*"]
authors = [
  { name="John Hover", email="hover@cshl.edu" },
]

requires-python = ">= 3.9"

dependencies = [
 	"pandas",
 	"pyarrow",
 	"numpy",
 	"scikit-learn",
 	"matplotlib",
 	"seaborn",
 	"biopython",
 	"scipy",
 	"fastcluster",
 	"openpyxl",
 	"bowtie",
 	"bowtie2",
 	"natsort",
 	"paramiko",
 	"h5py",
 	"dask",
 	"networkx",
 	"mergedeep",
]

[tool.setuptools.packages.find]
include = ["mapseq*"]

[project.scripts]
process_fastq_pairs = "mapseq.cli:process_fastq_pairs"


[project.urls]
Homepage = "https://github.com/ZadorLaboratory/mapseq-processing"
Issues = "https://github.com/ZadorLaboratory/mapseq-processing/issues"