Merge develop and fix conflicts in __init__.py

Author: codegen-sh[bot]

README.md

@@ -7,40 +7,47 @@ A powerful static code analysis system that provides extensive information about
 This analyzer provides comprehensive analysis of your codebase, including:
 
 ### 1. Codebase Structure Analysis
+
 - File Statistics (count, language, size)
 - Symbol Tree Analysis
 - Import/Export Analysis
 - Module Organization
 
 ### 2. Symbol-Level Analysis
+
 - Function Analysis (parameters, return types, complexity)
 - Class Analysis (methods, attributes, inheritance)
 - Variable Analysis
 - Type Analysis
 
 ### 3. Dependency and Flow Analysis
+
 - Call Graph Generation
 - Data Flow Analysis
 - Control Flow Analysis
 - Symbol Usage Analysis
 
 ### 4. Code Quality Analysis
+
 - Unused Code Detection
 - Code Duplication Analysis
 - Complexity Metrics
 - Style and Convention Analysis
 
 ### 5. Visualization Capabilities
+
 - Dependency Graphs
 - Call Graphs
 - Symbol Trees
 - Heat Maps
 
 ### 6. Language-Specific Analysis
+
 - Python-Specific Analysis
 - TypeScript-Specific Analysis
 
 ### 7. Code Metrics
+
 - Monthly Commits
 - Cyclomatic Complexity
 - Halstead Volume
@@ -49,12 +56,14 @@ This analyzer provides comprehensive analysis of your codebase, including:
 ## Installation
 
 1. Clone the repository:
+
 ```bash
 git clone https://github.com/yourusername/codebase-analyzer.git
 cd codebase-analyzer
 ```
 
 2. Install dependencies:
+
 ```bash
 pip install -r requirements.txt
 ```
@@ -111,4 +120,3 @@ python codebase_analyzer.py --repo-url https://github.com/username/repo --output
 ## License
 
 MIT
-

codegen-examples/examples/snapshot_event_handler/README.md

@@ -1,6 +1,6 @@
 # Event Handler with codebase snapshotting
 
-This project is designed to using Modal snapshotting to provide parsed codebase instances with minimal latency, make it more manageable to write event based handlers. 
+This project is designed to using Modal snapshotting to provide parsed codebase instances with minimal latency, make it more manageable to write event based handlers.
 
 Follow the instructions below to set up and deploy the application.
 
@@ -9,7 +9,7 @@ Follow the instructions below to set up and deploy the application.
 Before you begin, ensure you have the following installed and configured:
 
 1. **uv**: A tool for managing virtual environments and syncing dependencies.
-2. **Modal**: Ensure you have Modal configured on your system.
+1. **Modal**: Ensure you have Modal configured on your system.
 
 ## Setup Instructions
 
@@ -23,15 +23,15 @@ Before you begin, ensure you have the following installed and configured:
    source ./venv/bin/activate
    ```
 
-2. **Sync Dependencies**
+1. **Sync Dependencies**
 
    Sync the project dependencies using `uv`:
 
    ```bash
    uv sync
    ```
 
-3. **Deploy to Modal**
+1. **Deploy to Modal**
 
    Deploy the application to Modal by running:
 
@@ -48,7 +48,6 @@ Before you begin, ensure you have the following installed and configured:
 - `.env.template` and `.env`: Environment variable templates and configurations.
 - `pyproject.toml`: Project configuration and dependencies.
 
-
 ## Integration
 
-Once deployed, you can use the deployed web_url as the webhook endpoint for your slack, linear, or github webhooks.
+Once deployed, you can use the deployed web_url as the webhook endpoint for your slack, linear, or github webhooks.

codegen-examples/examples/swebench_agent_run/local_run.ipynb

@@ -32,7 +32,14 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "await run_eval(use_existing_preds=None, dataset=\"lite\", length=5, repo=\"django/django\", num_workers=10, model=\"claude-3-7-sonnet-latest\")"
+    "await run_eval(\n",
+    "    use_existing_preds=None,\n",
+    "    dataset=\"lite\",\n",
+    "    length=5,\n",
+    "    repo=\"django/django\",\n",
+    "    num_workers=10,\n",
+    "    model=\"claude-3-7-sonnet-latest\",\n",
+    ")"
    ]
   },
   {
@@ -76,7 +83,12 @@
    "source": [
     "from codegen.agents.code_agent import CodeAgent\n",
     "\n",
-    "agent = CodeAgent(codebase=codebase, tags=[\"local_test\"], model_name=\"claude-3-5-sonnet-latest\", model_provider=\"anthropic\")"
+    "agent = CodeAgent(\n",
+    "    codebase=codebase,\n",
+    "    tags=[\"local_test\"],\n",
+    "    model_name=\"claude-3-5-sonnet-latest\",\n",
+    "    model_provider=\"anthropic\",\n",
+    ")"
    ]
   },
   {

codegen-on-oss/codegen_on_oss/analyzers/README.md

@@ -25,6 +25,7 @@ analyzers/
 ### 1. API Interface (`api.py`)
 
 The main entry point for frontend applications. Provides REST-like endpoints for:
+
 - Codebase analysis
 - PR analysis
 - Dependency visualization
@@ -34,6 +35,7 @@ The main entry point for frontend applications. Provides REST-like endpoints for
 ### 2. Analyzer System (`analyzer.py`)
 
 Plugin-based system that coordinates different types of analysis:
+
 - Code quality analysis (complexity, maintainability)
 - Dependency analysis (imports, cycles, coupling)
 - PR impact analysis
@@ -42,6 +44,7 @@ Plugin-based system that coordinates different types of analysis:
 ### 3. Issue Tracking (`issues.py`)
 
 Comprehensive issue model with:
+
 - Severity levels (critical, error, warning, info)
 - Categories (dead code, complexity, dependency, etc.)
 - Location information and suggestions
@@ -50,6 +53,7 @@ Comprehensive issue model with:
 ### 4. Dependency Analysis (`dependencies.py`)
 
 Analysis of codebase dependencies:
+
 - Import dependencies between modules
 - Circular dependency detection
 - Module coupling analysis
@@ -59,6 +63,7 @@ Analysis of codebase dependencies:
 ### 5. Code Quality Analysis (`code_quality.py`)
 
 Analysis of code quality aspects:
+
 - Dead code detection (unused functions, variables)
 - Complexity metrics (cyclomatic, cognitive)
 - Parameter checking (types, usage)
@@ -121,11 +126,7 @@ dependency_issues = api.get_issues(category="dependency_cycle")
 module_deps = api.get_module_dependencies(format="json")
 
 # Get function call graph
-call_graph = api.get_function_call_graph(
-    function_name="main", 
-    depth=3,
-    format="json"
-)
+call_graph = api.get_function_call_graph(function_name="main", depth=3, format="json")
 
 # Export visualization to file
 api.export_visualization(call_graph, format="html", filename="call_graph.html")
@@ -197,52 +198,42 @@ For a web application exposing these endpoints with Flask:
 
 ```python
 from flask import Flask, request, jsonify
-from codegen_on_oss.analyzers.api import (
-    api_analyze_codebase,
-    api_analyze_pr,
-    api_get_visualization,
-    api_get_static_errors
-)
+from codegen_on_oss.analyzers.api import api_analyze_codebase, api_analyze_pr, api_get_visualization, api_get_static_errors
 
 app = Flask(__name__)
 
+
 @app.route("/api/analyze/codebase", methods=["POST"])
 def analyze_codebase():
     data = request.json
-    result = api_analyze_codebase(
-        repo_path=data.get("repo_path"),
-        analysis_types=data.get("analysis_types")
-    )
+    result = api_analyze_codebase(repo_path=data.get("repo_path"), analysis_types=data.get("analysis_types"))
     return jsonify(result)
 
+
 @app.route("/api/analyze/pr", methods=["POST"])
 def analyze_pr():
     data = request.json
-    result = api_analyze_pr(
-        repo_path=data.get("repo_path"),
-        pr_number=data.get("pr_number")
-    )
+    result = api_analyze_pr(repo_path=data.get("repo_path"), pr_number=data.get("pr_number"))
     return jsonify(result)
 
+
 @app.route("/api/visualize", methods=["POST"])
 def visualize():
     data = request.json
-    result = api_get_visualization(
-        repo_path=data.get("repo_path"),
-        viz_type=data.get("viz_type"),
-        params=data.get("params", {})
-    )
+    result = api_get_visualization(repo_path=data.get("repo_path"), viz_type=data.get("viz_type"), params=data.get("params", {}))
     return jsonify(result)
 
+
 @app.route("/api/issues", methods=["GET"])
 def get_issues():
     repo_path = request.args.get("repo_path")
     severity = request.args.get("severity")
     category = request.args.get("category")
-    
+
     api = create_api(repo_path=repo_path)
     return jsonify(api.get_issues(severity=severity, category=category))
 
+
 if __name__ == "__main__":
     app.run(debug=True)
-```
+```