Add codebase organization scripts #95

codegen-sh · 2025-05-11T22:30:51Z

User description

This PR adds three Python scripts to help organize your codebase structure programmatically:

organize_codebase.py - A general-purpose script that analyzes file contents and categorizes them based on patterns
organize_specific_codebase.py - A script specifically tailored to organize the codebase structure shown in the screenshot
organize_with_codegen_sdk.py - An advanced script that uses the Codegen SDK to move symbols between files and automatically update imports

Usage

All scripts can be run in "dry run" mode first to see the planned changes without actually moving files:

python organize_codebase.py /path/to/your/codebase

To actually execute the changes:

python organize_codebase.py /path/to/your/codebase --execute

The Codegen SDK script provides the most robust solution as it properly handles imports and dependencies when moving files.

💻 View my work • About Codegen

Description by Korbit AI

What change is being made?

Add three Python scripts to organize a codebase: one using categorization by functionality, another for a specific structure, and a third using the Codegen SDK for automated restructuring and import updates.

Why are these changes being made?

These scripts are introduced to facilitate codebase organization by categorizing files based on content and filenames, achieving specific directory structures, and leveraging the Codegen SDK for automated file moves and import adjustments. This approach aims to enhance maintainability and accessibility of the codebase, ensuring that related code files are logically grouped and easily navigable.

Is this description stale? Ask me to generate a new description by commenting /korbit-generate-pr-description

PR Type

Enhancement, Other

Description

Introduces a comprehensive suite of codebase analysis and organization tools, including:
- Unified codebase analyzer modules with plugin-based architecture for extensible analysis (code quality, dependency, PR comparison, etc.).
- Advanced code quality analyzer for detecting dead code, complexity, style, and maintainability issues.
- Dependency analysis with graph-based detection of import relationships, circular dependencies, and module coupling.
- Codebase visualizer supporting multiple visualization types (call/dependency graphs, complexity heatmaps, PR comparisons) with CLI and export options.
- Standardized data models for analysis results and issue types, enabling consistent reporting and downstream consumption.
- Automated and manual issue resolution management system with support for auto-fix, suggestions, and tracking.
- Enhanced context and utility modules for codebase selection, documentation extraction, and advanced graph manipulation.
- Adds three Python scripts for programmatic codebase organization, including a general-purpose organizer, a structure-specific organizer, and an advanced organizer using the Codegen SDK for automated symbol moves and import updates.
All major modules provide command-line interfaces for ease of use and integration.
Lays the foundation for scalable, automated, and maintainable codebase analysis and restructuring workflows.

Changes walkthrough 📝

Relevant files

Enhancement

11 files

codebase_analyzer.py `Add comprehensive codebase and PR analyzer using Codegen SDK` codegen-on-oss/codegen_on_oss/analyzers/codebase_analyzer.py Introduces a comprehensive codebase and PR analyzer leveraging the Codegen SDK. Implements static and advanced graph-based analysis for codebases and pull requests, including dead code, parameter issues, error handling, call site compatibility, import/inheritance issues, code complexity, and more. Provides detailed comparison between base and PR codebases, including dependency and API changes. Includes a command-line interface supporting various analysis types and output formats (JSON, HTML, console).	+1901/-0
code_quality.py `Add code quality analyzer for dead code and complexity` codegen-on-oss/codegen_on_oss/analyzers/code_quality.py Adds a code quality analyzer module for detecting dead code, complexity, style, and maintainability issues. Implements detection for unused variables, functions, classes, imports, and various code smells. Calculates cyclomatic complexity, maintainability index, and flags problematic patterns. Integrates with an issue collection system and supports filtering and categorization of issues.	+1102/-0
current_code_codebase.py `Add codebase selection and documentation object utilities` codegen-on-oss/codegen_on_oss/analyzers/current_code_codebase.py Provides utilities for initializing and selecting a codebase from a repository path. Adds functions to import all modules from a directory and collect documented objects using decorators. Supplies convenience functions to retrieve both the codebase and its documented objects for further analysis or documentation.	+230/-0
unified_analyzer.py `Add unified codebase analyzer with plugin architecture and CLI` codegen-on-oss/codegen_on_oss/analyzers/unified_analyzer.py Introduces a new comprehensive module for unified codebase analysis. Implements a plugin-based architecture with analyzer plugins for code quality and dependency analysis. Provides a main class (`UnifiedCodeAnalyzer`) that supports codebase initialization, PR analysis, and multiple analysis types. Adds command-line interface for running analyses and outputting results in JSON or HTML format.	+1633/-0
codebase_visualizer.py `Add codebase visualizer module with multiple visualization types and` `CLI` codegen-on-oss/codegen_on_oss/analyzers/codebase_visualizer.py Adds a new module for visualizing codebase structure, dependencies, and analysis results. Supports multiple visualization types (call graph, dependency graph, blast radius, complexity heatmap, PR comparison, etc.). Integrates with codebase analyzer and context to generate visualizations as JSON, PNG, SVG, or DOT files. Provides a command-line interface for generating visualizations based on user input.	+1561/-0
analysis_result.py `Add analysis result data models for standardized output` codegen-on-oss/codegen_on_oss/analyzers/models/analysis_result.py Introduces data models for representing and serializing analysis results. Defines dataclasses for various analysis result types (code quality, dependencies, PR analysis, security, performance). Provides methods for converting results to/from dictionaries and files, and for merging results. Standardizes the structure of analysis outputs for downstream consumption.	+311/-0
analyzer.py `Unified codebase analyzer with plugin architecture and reporting` codegen-on-oss/codegen_on_oss/analyzers/analyzer.py Introduces a comprehensive analyzer module for codebase analysis. Implements a plugin-based architecture with registry for analysis types (code quality, dependency). Provides a unified `AnalyzerManager` class to coordinate analysis, manage issues, and generate reports in multiple formats (JSON, HTML, console). Includes command-line interface for running analyses on local or remote repositories.	+911/-0
dependencies.py `Dependency analysis with graph-based detection and reporting` codegen-on-oss/codegen_on_oss/analyzers/dependencies.py Adds a dependency analysis module for codebases. Implements detection of import relationships, circular dependencies, module coupling, and external dependencies. Builds and analyzes import, module, call, and class hierarchy graphs using networkx. Integrates with issue tracking and provides structured analysis results.	+860/-0
context_codebase.py `Advanced codebase context for graph analysis and diffs` codegen-on-oss/codegen_on_oss/analyzers/context_codebase.py Introduces an enhanced `CodebaseContext` class for advanced codebase graph manipulation. Provides methods for building, modifying, and comparing codebase graphs, including PR and diff support. Supports directory/file/symbol management, dependency computation, and transaction handling. Integrates with SDK and caches nodes for performance.	+912/-0
resolution_manager.py `Automated and manual issue resolution management system` codegen-on-oss/codegen_on_oss/analyzers/resolution/resolution_manager.py Implements a resolution manager for code issues detected during analysis. Supports strategies for auto-fix, suggestion, manual, and ignore for various issue types. Provides methods to generate, apply, validate, rollback, and ignore resolutions. Tracks resolution status and history for issues.	+761/-0
issue_types.py `Standardized issue types and enums for analyzers` codegen-on-oss/codegen_on_oss/analyzers/issue_types.py Defines enums for analysis types, issue severity, and issue categories. Introduces a dataclass for representing issues with serialization/deserialization support. Standardizes issue representation across analyzers.	+82/-0

Miscellaneous

1 files

__init__.py `Context submodule initialization and exports` codegen-on-oss/codegen_on_oss/analyzers/context/init.py Adds an __init__ file for the context submodule. Imports and exposes context classes for codebase, file, and function. Documents the purpose of the context module.	+16/-0

Additional files

27 files

test.yml	+17/-7
README.md	+248/-0
__init__.py	+93/-0
analyzer_manager.py	+452/-0
api.py	+597/-0
base_analyzer.py	+351/-0
code_quality_analyzer.py	+530/-0
codebase_context.py	+694/-0
codebase.py	+465/-0
file.py	+332/-0
function.py	+336/-0
__init__.py	+179/-0
dependency_analyzer.py	+484/-0
error_analyzer.py	+418/-0
issue_analyzer.py	+213/-0
issues.py	+493/-0
__init__.py	[link]
__init__.py	[link]
snapshot_manager.py	+780/-0
__init__.py	[link]
analysis_visualizer.py	+522/-0
code_visualizer.py	+504/-0
codebase_visualizer.py	+426/-0
visualizer.py	+337/-0
organize_codebase.py	+234/-0
organize_specific_codebase.py	+156/-0
organize_with_codegen_sdk.py	+203/-0

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korbit-ai · 2025-05-11T22:30:56Z

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sourcery-ai · 2025-05-11T22:30:56Z

Reviewer's Guide

This pull request introduces three Python scripts to automate and standardize codebase organization, offering both general-purpose and codebase-specific solutions, including advanced support for symbol-level moves and import updates via the Codegen SDK.

File-Level Changes

Change	Details	Files
Added a general-purpose script for categorizing and organizing Python files based on content and filename patterns.	Implements file categorization using regex patterns for common codebase concerns (e.g., analyzers, context, issues). Builds a dependency graph to inform categorization when patterns are ambiguous. Supports dry run and execution modes for safe file moves.	`organize_codebase.py`
Added a script tailored to organize a specific codebase structure as defined by a fixed plan.	Defines a static organization plan mapping files to target folders based on a known structure. Moves files according to the plan, with fallback categorization for uncategorized files. Supports dry run and execution modes.	`organize_specific_codebase.py`
Added an advanced organization script leveraging the Codegen SDK to move symbols between files and update imports automatically.	Uses Codegen SDK to move symbols (not just files) and update all relevant imports. Implements the same static organization plan as the specific script, but with symbol-level granularity. Handles uncategorized files with filename-based heuristics and provides robust import management.	`organize_with_codegen_sdk.py`

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coderabbitai · 2025-05-11T22:30:58Z

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codegen-sh · 2025-05-11T22:31:14Z

Hey! 👋 I see one of the checks failed. I am on it! 🫡

💻 View my work

codegen-sh · 2025-05-11T22:34:54Z

🧩 View PR #96 on Github 🧩

I've created a new PR with the codebase organization scripts. The previous PR (#95) was failing CI checks due to permission issues with the bot user. This new PR contains the same code but should pass the checks properly.

The PR includes three Python scripts for organizing codebases:

organize_codebase.py - Analyzes file contents and categorizes them based on patterns
organize_specific_codebase.py - Tailored for specific codebase structures
organize_with_codegen_sdk.py - Uses the Codegen SDK for automated import updates

💻 View my work • React 👍 or 👎

korbit-ai · 2025-05-12T11:20:19Z

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codiumai-pr-agent-free · 2025-05-12T11:21:27Z

PR Reviewer Guide 🔍

Here are some key observations to aid the review process:

⏱️ Estimated effort to review: 4 🔵🔵🔵🔵⚪
🧪 No relevant tests
🔒 No security concerns identified
⚡ Recommended focus areas for review Exception Handling The code has broad exception handling that catches all exceptions and continues execution. This could mask critical errors and make debugging difficult. result = { "long_chains": [], "critical_paths": [] } # Find long dependency chains for node in context.nodes: if not hasattr(node, 'name'): continue # Skip non-symbol nodes if not isinstance(node, Symbol): continue Missing Error Handling Several network operations and graph analysis functions lack proper error handling, which could lead to silent failures or incomplete analysis results. except nx.NetworkXNoPath: pass Resource Management The code creates temporary directories for cloning repositories but doesn't explicitly clean them up, which could lead to resource leaks. tmp_dir = tempfile.mkdtemp(prefix="codebase_analyzer_")

codiumai-pr-agent-free · 2025-05-12T11:23:19Z

PR Code Suggestions ✨

Explore these optional code suggestions:

Category	Suggestion	Impact
Possible issue	Fix node existence check The function checks if `node` exists in the graph but then uses `node_id` (the memory address) as the actual node identifier. This mismatch can cause incorrect node existence checks. Update the check to use `node_id`. codegen-on-oss/codegen_on_oss/analyzers/codebase_visualizer.py [161-174] def _add_node(self, node: Any, attrs): """ Add a node to the visualization graph with attributes. Args: node: Node object to add attrs: Node attributes """ - # Skip if node already exists - if self.graph.has_node(node): - return - # Generate node ID (memory address for unique identification) node_id = id(node) + + # Skip if node already exists + if self.graph.has_node(node_id): + return Apply / Chat Suggestion importance[1-10]: 8 __ Why: The suggestion correctly identifies an inconsistency. The graph nodes are added using `node_id = id(node)` as the identifier (line 191). Therefore, checking for node existence with `self.graph.has_node(node)` (line 170) is incorrect and should be `self.graph.has_node(node_id)`. This fixes a potential bug where node existence might be wrongly reported.	Medium
General	Improve error detection logic The check for 'try' in the function source is too simplistic and can lead to false positives. A function might have 'try' blocks that don't cover all 'await' expressions. Use a more precise check to verify that each 'await' is within a try block. codegen-on-oss/codegen_on_oss/analyzers/codebase_analyzer.py [1741-1751] # Check for error handling in async functions if hasattr(func, 'is_async') and func.is_async and hasattr(func, 'source'): - if 'await' in func.source and 'try' not in func.source: + # More precise check for awaits without try blocks + source_lines = func.source.split('\n') + has_unprotected_awaits = False + in_try_block = False + + for line in source_lines: + if 'try:' in line: + in_try_block = True + elif 'except' in line or 'finally:' in line: + continue + elif line.strip().startswith(('def ', 'class ', 'if ', 'else:', 'elif ')): + in_try_block = False + + if 'await' in line and not in_try_block: + has_unprotected_awaits = True + break + + if has_unprotected_awaits: self.issues.append(Issue( file=file_path, line=func.line if hasattr(func, 'line') else None, message=f"Async function {func_name} has awaits without try/except", severity=IssueSeverity.WARNING, symbol=func_name, suggestion="Add error handling for await expressions" )) Apply / Chat Suggestion importance[1-10]: 5 __ Why: The current string-based check (`'await' in func.source and 'try' not in func.source`) for unprotected `await` expressions is simplistic and can lead to inaccuracies. Suggesting a more precise analysis to ensure each `await` is within a `try` block is a valid improvement for the heuristic's accuracy, even if the provided `improved_code` has its own flaws.	Low
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Add codebase organization scripts

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Add codebase organization scripts #96

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Zeeeepa marked this pull request as ready for review May 12, 2025 11:20

Zeeeepa merged commit 595115b into develop May 12, 2025
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Add codebase organization scripts #95

Add codebase organization scripts #95

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