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# PROPERseqTools
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##PROPER V.1.0
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Available at https://sysbiocomp.ucsd.edu/proper/
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## Overview
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Protein-protein Interaction Sequencing (PROPER-seq) is a high-throughput sequencing technology that efficiently maps cell wide protein-protein interactions in vitro. Here, we distribute PROPERseqTools, a standardized data processing pipeline to identify protein-protein interactions from fastq files of PROPER-seq experiments.<br />
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The schematic diagram below describes the various stages of the PROPERseqTools pipeline including pre-processing of the raw reads, alignment to the transcritome, identification of chimeric read pairs and identification of protein-protein interactions.<br />

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