Update PROPERseqTools

Author: qizhijie

bin/PROPERseqTools

@@ -179,13 +179,12 @@ wait
 python runDeduplication_pub.py $outputDir $jobId 2>> $outputDir/${jobId}errorLog.txt
 wait
 
-rm $target/read1_tx/mapped.sorted.bed_chunk*
-rm $target/read2_tx/mapped.sorted.bed_chunk*
-wait
-
 python callPPIs_pub.py $outputDir $pCutoff $oddsCutoff $rcCutoff $jobId 2>> $outputDir/${jobId}errorLog.txt
 wait
 
+rm $target/read1_tx/mapped.sorted.bed_chunk*
+rm $target/read2_tx/mapped.sorted.bed_chunk*
+wait
 
 if [ $removeFlag == 'T' ]
 then