Update PROPERseqTools

Author: qizhijie

bin/PROPERseqTools

@@ -117,9 +117,9 @@ cat $outputDir/${jobId}intermediateFiles/runStart.txt > $outputDir/${jobId}summa
 wait
 
 
-cutadapt -j $numT -a TGACCAAGACGCCAAAAACATAAAGAAAGGCCCGGCGCCATTGGTCA -a TGACCAATGGCGCCGGGCCTTTCTTTATGTTTTTGGCGTCTTGGTCA -g TTCACTGGAGGGGGGCTCACGAGTAAGGAGGATCCAACATG -g CATGTTGGATCCTCCTTACTCGTGAGCCCCCCTCCAGTGAA -O 23 $read1 > $outputDir/${jobId}intermediateFiles/R1.cutadapt.fastq 2> $outputDir/${jobId}intermediateFiles/R1.linkers.txt &
+cutadapt -j $numT -a TGACCAAGACGCCAAAAACATAAAGAAAGGCCCGGCGCCATTGGTCA -a TGACCAATGGCGCCGGGCCTTTCTTTATGTTTTTGGCGTCTTGGTCA -g TTCACTGGAGGGGGGCTCACGAGTAAGGAGGATCCAACATG -g CATGTTGGATCCTCCTTACTCGTGAGCCCCCCTCCAGTGAA -O 22 $read1 > $outputDir/${jobId}intermediateFiles/R1.cutadapt.fastq 2> $outputDir/${jobId}intermediateFiles/R1.linkers.txt &
 
-cutadapt -j $numT -a TGACCAAGACGCCAAAAACATAAAGAAAGGCCCGGCGCCATTGGTCA -a TGACCAATGGCGCCGGGCCTTTCTTTATGTTTTTGGCGTCTTGGTCA -g TTCACTGGAGGGGGGCTCACGAGTAAGGAGGATCCAACATG -g CATGTTGGATCCTCCTTACTCGTGAGCCCCCCTCCAGTGAA -O 23 $read2 > $outputDir/${jobId}intermediateFiles/R2.cutadapt.fastq 2> $outputDir/${jobId}intermediateFiles/R2.linkers.txt &
+cutadapt -j $numT -a TGACCAAGACGCCAAAAACATAAAGAAAGGCCCGGCGCCATTGGTCA -a TGACCAATGGCGCCGGGCCTTTCTTTATGTTTTTGGCGTCTTGGTCA -g TTCACTGGAGGGGGGCTCACGAGTAAGGAGGATCCAACATG -g CATGTTGGATCCTCCTTACTCGTGAGCCCCCCTCCAGTGAA -O 22 $read2 > $outputDir/${jobId}intermediateFiles/R2.cutadapt.fastq 2> $outputDir/${jobId}intermediateFiles/R2.linkers.txt &
 wait