Merge pull request #63 from aCLImatise/basecamp-docs

Basecamp docs

Author: multimeric

README.rst

@@ -14,6 +14,10 @@ Currently aCLImatise supports both `CWL <https://www.commonwl.org/>`_ and
 `WDL <https://openwdl.org/>`_ outputs, but other formats will be considered in the future, especially pull
 requests to support them.
 
+Please also refer to `The aCLImatise Base Camp <https://aclimatise.github.io/BaseCamp/>`_, which is a database of pre-computed tool definitions
+generated by the aCLImatise parser. Most bioinformatics tools have a tool definition already generated in the Base Camp,
+so you may not need to run aCLImatise directly.
+
 Example
 -------
 

docs/changes.rst

@@ -6,7 +6,7 @@ Changelog
 * Add ``command['sort']`` which lets you access subcommands by name
 
 2.1.0 (2020-09-22)
-----------------
+------------------
 * Add `bedtools random` as a test case
 * Use a simple metric to exclude flags unless they have a somewhat valid description text, this should result in less false-positive flags being detected
 * Fixed the `id` field in the CWL tool definitions including some path elements (like `..`)
@@ -19,9 +19,9 @@ Changelog
 * Rename the CLI utility from ``acclimatise`` to ``aclimatise``.
 
 1.2.0 (2020-09-13)
------------------
+------------------
 User-Facing Changes
-******************
+*******************
 * Add output generation for CWL and WDL
 
 Fixes

docs/index.rst

@@ -16,6 +16,7 @@ Welcome to aCLImatise's documentation!
    model
    grammar
    changes
+   aCLImatise Base Camp <https://aclimatise.github.io/BaseCamp/>
 
 .. include:: ../README.rst
 

setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = aclimatise
-version = 2.2.0
+version = 2.2.0.post1
 description = aCLImatise is a Python library and command-line utility for parsing the help output of a command-line tool and then outputting a description of the tool in a more structured format
 long_description = file: README.rst
 long_description_content_type: text/x-rst