Skip to content

Commit b0c996c

Browse files
committed
chore: updated doc formatting
1 parent 8f19175 commit b0c996c

32 files changed

+12224
-12276
lines changed

docs/_images/notebooks_getting-started_11_0.svg

Lines changed: 2626 additions & 2626 deletions
Loading

docs/_images/notebooks_getting-started_13_0.svg

Lines changed: 2788 additions & 2788 deletions
Loading

docs/_images/notebooks_getting-started_17_0.svg

Lines changed: 5456 additions & 5456 deletions
Loading

docs/_images/notebooks_getting-started_23_0.svg

Lines changed: 1136 additions & 1136 deletions
Loading

docs/_modules/geovar/binning.html

Lines changed: 12 additions & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -15,22 +15,22 @@
1515
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
1616
<link rel="index" title="Index" href="../../genindex.html" />
1717
<link rel="search" title="Search" href="../../search.html" />
18-
18+
1919
<link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
20-
21-
20+
21+
2222
<meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
2323

2424
</head><body>
25-
25+
2626

2727
<div class="document">
2828
<div class="documentwrapper">
2929
<div class="bodywrapper">
30-
30+
3131

3232
<div class="body" role="main">
33-
33+
3434
<h1>Source code for geovar.binning</h1><div class="highlight"><pre>
3535
<span></span><span class="sd">&quot;&quot;&quot;Module to bin allele frequencies to generate GeoVar codes.&quot;&quot;&quot;</span>
3636

@@ -150,7 +150,7 @@ <h1>Source code for geovar.binning</h1><div class="highlight"><pre>
150150
</pre></div>
151151

152152
</div>
153-
153+
154154
</div>
155155
</div>
156156
<div class="sphinxsidebar" role="navigation" aria-label="main navigation">
@@ -219,15 +219,15 @@ <h3 id="searchlabel">Quick search</h3>
219219
</div>
220220
<div class="footer">
221221
&copy;2020, Arjun Biddanda, Daniel P. Rice, John Novembre.
222-
222+
223223
</div>
224224

225-
225+
226226
<a href="https://github.com/aabiddanda/geovar" class="github">
227227
<img style="position: absolute; top: 0; right: 0; border: 0;" src="https://s3.amazonaws.com/github/ribbons/forkme_right_darkblue_121621.png" alt="Fork me on GitHub" class="github"/>
228228
</a>
229-
230229

231-
230+
231+
232232
</body>
233-
</html>
233+
</html>

docs/_modules/geovar/utils.html

Lines changed: 12 additions & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -15,22 +15,22 @@
1515
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
1616
<link rel="index" title="Index" href="../../genindex.html" />
1717
<link rel="search" title="Search" href="../../search.html" />
18-
18+
1919
<link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
20-
21-
20+
21+
2222
<meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
2323

2424
</head><body>
25-
25+
2626

2727
<div class="document">
2828
<div class="documentwrapper">
2929
<div class="bodywrapper">
30-
30+
3131

3232
<div class="body" role="main">
33-
33+
3434
<h1>Source code for geovar.utils</h1><div class="highlight"><pre>
3535
<span></span><span class="sd">&quot;&quot;&quot;Utilities for file conversions for GeoVar.&quot;&quot;&quot;</span>
3636

@@ -133,7 +133,7 @@ <h1>Source code for geovar.utils</h1><div class="highlight"><pre>
133133
</pre></div>
134134

135135
</div>
136-
136+
137137
</div>
138138
</div>
139139
<div class="sphinxsidebar" role="navigation" aria-label="main navigation">
@@ -202,15 +202,15 @@ <h3 id="searchlabel">Quick search</h3>
202202
</div>
203203
<div class="footer">
204204
&copy;2020, Arjun Biddanda, Daniel P. Rice, John Novembre.
205-
205+
206206
</div>
207207

208-
208+
209209
<a href="https://github.com/aabiddanda/geovar" class="github">
210210
<img style="position: absolute; top: 0; right: 0; border: 0;" src="https://s3.amazonaws.com/github/ribbons/forkme_right_darkblue_121621.png" alt="Fork me on GitHub" class="github"/>
211211
</a>
212-
213212

214-
213+
214+
215215
</body>
216-
</html>
216+
</html>

docs/_modules/geovar/viz.html

Lines changed: 12 additions & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -15,22 +15,22 @@
1515
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
1616
<link rel="index" title="Index" href="../../genindex.html" />
1717
<link rel="search" title="Search" href="../../search.html" />
18-
18+
1919
<link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
20-
21-
20+
21+
2222
<meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
2323

2424
</head><body>
25-
25+
2626

2727
<div class="document">
2828
<div class="documentwrapper">
2929
<div class="bodywrapper">
30-
30+
3131

3232
<div class="body" role="main">
33-
33+
3434
<h1>Source code for geovar.viz</h1><div class="highlight"><pre>
3535
<span></span><span class="sd">&quot;&quot;&quot;Module for generating GeoVar plots for a given dataset.&quot;&quot;&quot;</span>
3636

@@ -547,7 +547,7 @@ <h1>Source code for geovar.viz</h1><div class="highlight"><pre>
547547
</pre></div>
548548

549549
</div>
550-
550+
551551
</div>
552552
</div>
553553
<div class="sphinxsidebar" role="navigation" aria-label="main navigation">
@@ -616,15 +616,15 @@ <h3 id="searchlabel">Quick search</h3>
616616
</div>
617617
<div class="footer">
618618
&copy;2020, Arjun Biddanda, Daniel P. Rice, John Novembre.
619-
619+
620620
</div>
621621

622-
622+
623623
<a href="https://github.com/aabiddanda/geovar" class="github">
624624
<img style="position: absolute; top: 0; right: 0; border: 0;" src="https://s3.amazonaws.com/github/ribbons/forkme_right_darkblue_121621.png" alt="Fork me on GitHub" class="github"/>
625625
</a>
626-
627626

628-
627+
628+
629629
</body>
630-
</html>
630+
</html>

docs/_modules/index.html

Lines changed: 12 additions & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -15,30 +15,30 @@
1515
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
1616
<link rel="index" title="Index" href="../genindex.html" />
1717
<link rel="search" title="Search" href="../search.html" />
18-
18+
1919
<link rel="stylesheet" href="../_static/custom.css" type="text/css" />
20-
21-
20+
21+
2222
<meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
2323

2424
</head><body>
25-
25+
2626

2727
<div class="document">
2828
<div class="documentwrapper">
2929
<div class="bodywrapper">
30-
30+
3131

3232
<div class="body" role="main">
33-
33+
3434
<h1>All modules for which code is available</h1>
3535
<ul><li><a href="geovar/binning.html">geovar.binning</a></li>
3636
<li><a href="geovar/utils.html">geovar.utils</a></li>
3737
<li><a href="geovar/viz.html">geovar.viz</a></li>
3838
</ul>
3939

4040
</div>
41-
41+
4242
</div>
4343
</div>
4444
<div class="sphinxsidebar" role="navigation" aria-label="main navigation">
@@ -105,15 +105,15 @@ <h3 id="searchlabel">Quick search</h3>
105105
</div>
106106
<div class="footer">
107107
&copy;2020, Arjun Biddanda, Daniel P. Rice, John Novembre.
108-
108+
109109
</div>
110110

111-
111+
112112
<a href="https://github.com/aabiddanda/geovar" class="github">
113113
<img style="position: absolute; top: 0; right: 0; border: 0;" src="https://s3.amazonaws.com/github/ribbons/forkme_right_darkblue_121621.png" alt="Fork me on GitHub" class="github"/>
114114
</a>
115-
116115

117-
116+
117+
118118
</body>
119-
</html>
119+
</html>

docs/_sources/stubs/geovar.GeoVar.rst.txt

Lines changed: 3 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -5,23 +5,17 @@
55

66
.. autoclass:: GeoVar
77

8-
8+
99
.. automethod:: __init__
1010

11-
11+
1212
.. rubric:: Methods
1313

1414
.. autosummary::
15-
15+
1616
~GeoVar.__init__
1717
~GeoVar.add_freq_mat
1818
~GeoVar.count_geovar_codes
1919
~GeoVar.generate_bins
2020
~GeoVar.geovar_binning
2121
~GeoVar.geovar_codes_streaming
22-
23-
24-
25-
26-
27-

docs/_sources/stubs/geovar.GeoVarPlot.rst.txt

Lines changed: 3 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -5,14 +5,14 @@
55

66
.. autoclass:: GeoVarPlot
77

8-
8+
99
.. automethod:: __init__
1010

11-
11+
1212
.. rubric:: Methods
1313

1414
.. autosummary::
15-
15+
1616
~GeoVarPlot.__init__
1717
~GeoVarPlot.add_cmap
1818
~GeoVarPlot.add_data_geovar
@@ -26,9 +26,3 @@
2626
~GeoVarPlot.reorder_pops
2727
~GeoVarPlot.set_colors
2828
~GeoVarPlot.sort_geodist
29-
30-
31-
32-
33-
34-

0 commit comments

Comments
 (0)