Merge branch 'release/v0.9.0'

Author: mdbenito

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.8.1
+current_version = 0.9.0
 commit = False
 tag = False
 allow_dirty = False

.gitattributes

@@ -1 +1,4 @@
 notebooks/*.ipynb -linguist-detectable
+*.png filter=lfs diff=lfs merge=lfs -text
+*.svg filter=lfs diff=lfs merge=lfs -text
+logo.svg -filter=lfs -diff=lfs -merge=lfs text

.github/actions/python/action.yml

@@ -8,7 +8,7 @@ runs:
   using: "composite"
   steps:
   - name: Set up Python ${{ inputs.python_version }}
-    uses: actions/setup-python@v4
+    uses: actions/setup-python@v5
     with:
       python-version: ${{ inputs.python_version }}
       cache: 'pip'

.github/workflows/main.yaml

@@ -24,12 +24,12 @@ jobs:
     name: Lint code and check type hints
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
     - name: Setup Python 3.8
       uses: ./.github/actions/python
       with:
         python_version: 3.8
-    - uses: actions/cache@v3
+    - uses: actions/cache@v4
       with:
         path: ~/.cache/pre-commit
         key: pre-commit-${{ env.pythonLocation }}-${{ hashFiles('.pre-commit-config.yaml') }}
@@ -43,19 +43,21 @@ jobs:
       run: |
         MYPY_VERSION=$(mypy --version | sed 's/[^0-9.]*\([0-9.]*\).*/\1/')
         echo "key=mypy-$MYPY_VERSION-${{ env.pythonLocation }}" >> $GITHUB_OUTPUT
-    - uses: actions/cache@v3
+    - uses: actions/cache@v4
       with:
         path: .mypy_cache
         key: ${{ steps.generate-mypy-cache-key.outputs.key }}
     - name: Check Type Hints
       run: mypy src/
+
   docs:
     name: Build Docs
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
         fetch-depth: 0
+        lfs: true
     - name: Setup Python 3.8
       uses: ./.github/actions/python
       with:
@@ -66,11 +68,12 @@ jobs:
         pandoc-version: ${{ env.PANDOC_VERSION }}
     - name: Build Docs
       run: mkdocs build
+
   group-tests:
     strategy:
       fail-fast: false
       matrix:
-        python_version: ["3.8", "3.9", "3.10"]
+        python_version: ["3.8", "3.9", "3.10", "3.11"]
         group_number: [1, 2, 3, 4]
     name: Run Tests - Python ${{ matrix.python_version }} - Group ${{ matrix.group_number }}
     uses: ./.github/workflows/run-tests-workflow.yaml
@@ -79,15 +82,21 @@ jobs:
       group_number: ${{ matrix.group_number }}
       python_version: ${{ matrix.python_version }}
     needs: [code-quality]
+
   notebook-tests:
     strategy:
+      fail-fast: false
       matrix:
-        python_version: ["3.8", "3.9", "3.10"]
-    name: Run Notebook tests -  Python ${{ matrix.python_version }}
+        python_version: ["3.8", "3.9", "3.10", "3.11"]
+        group_number: [1, 2, 3, 4]
+    name: Run Notebook tests -  Python ${{ matrix.python_version }} - Group ${{ matrix.group_number }}
     uses: ./.github/workflows/run-notebook-tests-workflow.yaml
     with:
       python_version: ${{ matrix.python_version }}
+      split_size: 4
+      group_number: ${{ matrix.group_number }}
     needs: [code-quality]
+
   push-docs-and-release-testpypi:
     name: Push Docs and maybe release Package to TestPyPI
     runs-on: ubuntu-latest
@@ -96,7 +105,10 @@ jobs:
     concurrency:
       group: publish
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+          lfs: true
       - name: Setup Python 3.8
         uses: ./.github/actions/python
         with:

.github/workflows/publish.yaml

@@ -1,4 +1,4 @@
-name: Publish Python Package to PyPI
+name: Publish package and docs
 
 on:
   release:
@@ -28,12 +28,17 @@ jobs:
     steps:
       - name: Checking out last commit in release
         if: ${{ github.event_name != 'workflow_dispatch' }}
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
+        with:
+          lfs: true
+          fetch-depth: 0
       - name: Checking out last commit for tag ${{ inputs.tag_name }}
-        uses: actions/checkout@v3
         if: ${{ github.event_name == 'workflow_dispatch' }}
+        uses: actions/checkout@v4
         with:
           ref: ${{ inputs.tag_name }}
+          lfs: true
+          fetch-depth: 0
       - name: Fail if running locally
         if: ${{ env.ACT }} # skip during local actions testing
         run: |

.github/workflows/run-notebook-tests-workflow.yaml

@@ -3,6 +3,14 @@ name: Run Notebook Tests
 on:
   workflow_call:
     inputs:
+      split_size:
+        description: "Determines the number of groups into which the tests should be split"
+        type: string
+        default: 4
+      group_number:
+        description: "Determines which which group of tests to run. Can be 1, 2, ..., split_size"
+        type: string
+        required: true      
       python_version:
         description: "Determines which Python version to use"
         type: string
@@ -15,20 +23,20 @@ jobs:
   run-tests:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
         fetch-depth: 0
     - name: Setup Python ${{ inputs.python_version }}
       uses: ./.github/actions/python
       with:
         python_version: ${{ inputs.python_version }}
     - name: Cache Tox Directory for Tests
-      uses: actions/cache@v3
+      uses: actions/cache@v4
       with:
         key: tox-${{ runner.os }}-${{ github.ref }}-${{ hashFiles('tox.ini', 'requirements.txt') }}-${{ inputs.python_version }}
         path: .tox
     - name: Set up memcached
       uses: niden/actions-memcached@v7
     - name: Test Notebooks
-      run: tox -e notebook-tests
-      continue-on-error: true
+      run: tox -e notebook-tests -- --durations-path .notebook_test_durations --splits ${{ inputs.split_size }} --group ${{ inputs.group_number }}
+

.github/workflows/run-tests-workflow.yaml

@@ -16,22 +16,28 @@ on:
         type: string
         required: true
 
+
 env:
   PY_COLORS: 1
 
 jobs:
   run-tests:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v3
+    - name: Free Disk Space (Ubuntu)
+      uses: jlumbroso/free-disk-space@main
+      with:
+        large-packages: false
+        docker-images: false
+    - uses: actions/checkout@v4
       with:
         fetch-depth: 0
     - name: Setup Python ${{ inputs.python_version }}
       uses: ./.github/actions/python
       with:
         python_version: ${{ inputs.python_version }}
     - name: Cache Tox Directory for Tests
-      uses: actions/cache@v3
+      uses: actions/cache@v4
       with:
         key: tox-${{ runner.os }}-${{ github.ref }}-${{ hashFiles('tox.ini', 'requirements.txt') }}-${{ inputs.python_version }}
         path: .tox
@@ -40,7 +46,7 @@ jobs:
     - name: Test Group ${{ inputs.group_number }}
       run: tox -e tests -- --slow-tests --splits ${{ inputs.split_size }} --group ${{ inputs.group_number }}
     - name: Upload coverage reports to Codecov
-      uses: codecov/codecov-action@v3
+      uses: codecov/codecov-action@v4
       with:
         token: ${{ secrets.CODECOV_TOKEN }}
         files: ./coverage.xml

.github/workflows/stale.yaml

@@ -7,7 +7,7 @@ jobs:
   stale:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/stale@v6
+      - uses: actions/stale@v9
         with:
           only-labels: 'awaiting-reply'
           days-before-stale: 30

.notebook_test_durations

@@ -0,0 +1,12 @@
+{
+    "notebooks/data_oob.ipynb::": 14.514983271001256,
+    "notebooks/influence_imagenet.ipynb::": 15.937124550999215,
+    "notebooks/influence_sentiment_analysis.ipynb::": 26.479645616000198,
+    "notebooks/influence_synthetic.ipynb::": 6.61773010700017,
+    "notebooks/influence_wine.ipynb::": 16.312171267998565,
+    "notebooks/least_core_basic.ipynb::": 14.375480750999486,
+    "notebooks/msr_banzhaf_digits.ipynb::": 106.6507187110019,
+    "notebooks/shapley_basic_spotify.ipynb::": 15.657225806997303,
+    "notebooks/shapley_knn_flowers.ipynb::": 3.9943819290019746,
+    "notebooks/shapley_utility_learning.ipynb::": 25.939783253001224
+}