Visualizing plots

[miakeady]

Hello,

I am able to install MetaLonDA and follow the tutorial fine except when I get to making the plots. When I run output.metalonda.f5 or output.metalonda.all the plots do not show up. Am I missing something?

Thank you,
Mia

[aametwally]

Hi Mia,

All figures are exported to your "current working directory", which you can easily identify by running this command "getwd()". You will see all figures in a directory that is named after the prefix parameter. If you just copy and paste the example in the README file, which is this:
output.metalonda.f5 = metalonda(Count = metalonda_test_data[5,], Time = Time, Group = Group,
ID = ID, n.perm = 100, fit.method = "nbinomial", points = points,
text = rownames(metalonda_test_data)[5], parall = FALSE, pvalue.threshold = 0.05,
adjust.method = "BH", time.unit = "days", ylabel = "Normalized Count",
col = c("black", "green"), prefix = "Test_F5")

The directory name would be "Test_F5".

Please let me know if you still have any issues. Thanks