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Remove '#' from feature_id in output headers
remove # from feature_id headers
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src/long_read_counter.py

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -344,9 +344,9 @@ def add_unaligned(self, n_reads=1):
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def format_header(self, all_groups, value_name="count"):
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if self.ignore_read_groups:
347-
return "#feature_id\t%s\n" % value_name
347+
return "feature_id\t%s\n" % value_name
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else:
349-
return "#feature_id\t" + "\t".join(all_groups) + "\n"
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return "feature_id\t" + "\t".join(all_groups) + "\n"
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def add_confirmed_features(self, features):
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self.confirmed_features.update(features)
@@ -403,7 +403,7 @@ def dump_ungrouped(self, all_features):
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def dump_grouped(self, all_features):
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with self.get_output_file_handler() as output_file:
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output_file.write("#feature_id\tgroup_id\tcount\n")
406+
output_file.write("feature_id\tgroup_id\tcount\n")
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for feature_id in all_features:
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row_count = 0
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for group_id in self.feature_counter[feature_id].data.keys():

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