Binspreader mainly increases contamination #1174
Description
Description of bug
I run binspreader after metaspades assembly and binning with VAMB and assessed bin quality with checkM2.
My metaenome is relatively simple infant gut.
My comparison binspreader increased completeness for some bins it increased contamination for most of the bins.
I played around with adding pe-reads or not
toogle sparse-propagation ...
Results seem not much changed
There might be the option to tune the la parameter but I have no idea how much..
spades.log
NA
params.txt
NA
SPAdes version
3.16
Operating System
linux
Python Version
No response
Method of SPAdes installation
conda
No errors reported in spades.log
- Yes