dcm2nii

DCM2NII attempts to convert images from the proprietary scanner format to the NIfTI format used by FSL, SPM5, MRIcron and many other brain imaging tools. NIfTI is a modern incarnation of the Analyze format, but includes important information like the orientation of the image. DCM2NII is a stand-alone program that is distributed with MRIcron. It is natively compiled for Windows, Linux x86, Mac OSX PPC and Mac OSX x86.

1. Create a project

2. Upload files

Select your input files

Please note the following prerequisites: For this tutorial, we got DICOM input file collection from an Open data source 3dicomeviewer

3. Launch Task

Process the Launch Task steps and select dcm2nii tool:

4. Task parameters

Set up the task parameters according to your analysis

The task will be launched in the background and you can monitor the status:

5. Output (Derivatives)

When the task is completed, the output will be available in the files.

6. Visualization