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Some edits to the install tutorial. All very minor
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doc/user/tutorials/install.html

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@@ -78,8 +78,8 @@ <h3>Downloading</h3>
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from the <a href="http://crux.ms/download.html">download page</a>.
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<p/>
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<ol>
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<li>click on the list box under "Choose Download Type", and select the distribution
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you want. Available choices are:
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<li>Click on the list box under "Choose Download Type" and select the distribution
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you want. Available choices are
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<ul>
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<li>Linux X86-64</li>
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<li>MacOS X86-64</li>
@@ -103,7 +103,7 @@ <h3>Downloading</h3>
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<p/>
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Click on the button labeled "I agree to the licensing terms,
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download release x.x of Crux" to download the latest stable release
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of crux.
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of Crux.
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</dd>
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<dt>
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<p/>
@@ -124,14 +124,14 @@ <h3>Downloading</h3>
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<h3>Linux</h3>
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<h3>Installing Pre-compiled Crux Binaries on Linux</h3>
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<ul>
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<li>The current Linux binary of Crux is compiled on Ubuntu 22.04 for X86-64,
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<li>The current Linux binary of Crux is compiled on Ubuntu 22.04 for X86-64
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but should work on most Linux distributions.
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It requires that version 2.39 or later of the C runtime library be installed.
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You can determine which version of the C runtime library is installed
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by running
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<div class=code><code>
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ldd --version
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</code></div>
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</code></div>.
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<p/>
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</li>
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@@ -152,11 +152,11 @@ <h3>Installing Pre-compiled Crux Binaries on Linux</h3>
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You should now have a new directory,
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<span class=file>crux-x.xx.Linux.x86_64</span>,
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with two subdirectories, <span class=file>bin</span> and <span
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class=file>doc</span>. The <span class=prog>crux</span> programs are
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class=file>doc</span>. The <span class=prog>Crux</span> programs are
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in the <span class=file>bin</span> directory. You may want to move
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these files somewhere
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more convenient for you, but otherwise, that completes the
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installation! Skip ahead to
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installation. Skip ahead to
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<a href="#linux_path">Setting the PATH on Linux and MacOS</a>
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for notes on how to run the executables.
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</ul>
@@ -176,14 +176,14 @@ <h3>Building Crux From Source on Linux</h3>
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<li><code>git</code></li>
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</ul>
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<p/>
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Building <span class=prog>crux</span> also requires the
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Building <span class=prog>Crux</span> also requires the
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<a href="http://proteowizard.sourceforge.net"><span class=prog>Proteowizard</span></a>
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and
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<a href="http://percolator.ms"><span class=prog>Percolator</span></a>
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libraries.
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These will automatically be copied from the <span class=prog>Proteowizard</span>
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and <span class=prog>Percolator</span>
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repositories and statically linked into <span class=prog>crux</span>.
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repositories and statically linked into <span class=prog>Crux</span>.
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</li>
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<p/>
@@ -226,8 +226,8 @@ <h3>Building Crux From Source on Linux</h3>
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</div>
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<p/>
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where <span class=file>&lt;install directory&gt;</span> is
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the location where you wish to install the <span class=prog>crux</span> programs.
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If you want <span class=prog>crux</span> to go in <span class=file>$HOME/bin</span>,
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the location where you wish to install the <span class=prog>Crux</span> programs.
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If you want <span class=prog>Crux</span> to go in <span class=file>$HOME/bin</span>,
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then <span class=file>&lt;install directory&gt;</span> would be <span class=file>$HOME</span>.
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The installation process will automatically put the programs in a directory called
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<span class=file>bin</span>.
@@ -253,7 +253,7 @@ <h3>Building Crux From Source on Linux</h3>
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</code>
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</div>
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<p/>
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The <span class=prog>crux</span> programs are
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The <span class=prog>Crux</span> programs are
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in the <span class=file>bin</span> subdirectory
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of the
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<span class=file>&lt;install directory&gt;</span>
@@ -293,7 +293,7 @@ <h3>Installing Pre-compiled Crux Binaries on MacOS</h3>
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You should now have a new directory,
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<span class=file>crux-x.xx.Darwin.x86_64</span>,
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with two subdirectories <span class=file>bin</span>, and <span
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class=file>doc</span>. The <span class=prog>crux</span> programs are
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class=file>doc</span>. The <span class=prog>Crux</span> programs are
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in the <span class=file>bin</span> directory. You may want to move
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these files somewhere
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more convenient for you, but otherwise, that completes the
@@ -317,25 +317,25 @@ <h3>Building Crux From Source on MacOS</h3>
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version of tar)</li>
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</ul>
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<p/>
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Building <span class=prog>crux</span> also requires the
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Building <span class=prog>Crux</span> also requires the
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<a href="http://proteowizard.sourceforge.net"><span class=prog>Proteowizard</span></a>
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and
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<a href="http://percolator.ms"><span class=prog>Percolator</span></a>
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libraries.
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These will automatically be copied from the <span class=prog>Proteowizard</span>
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and <span class=prog>Percolator</span>
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repositories and statically linked into <span class=prog>crux</span>.
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repositories and statically linked into <span class=prog>Crux</span>.
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<p />
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Building <span class=prog>Crux</span> on MacOS requires a current version of
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<span class=prog>XCode</span>, and the XCode command line tools.
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Earlier versions of <span class=prog>Crux</span>
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had to be built using the GCC compilers,
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which are not supported by Apple.
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If you have the both the GCC and Apple compilers installed, you'll need to
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If you have both the GCC and Apple compilers installed, you'll need to
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adjust the <span class=prog>PATH</span> environment variable so that the
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Apple compilers are found first.
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Alternatively, you can specify which compilers should be used by setting
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the <span class=prog>CC</span>, and <span class=prog>CXX</span>.
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the environment variables <span class=prog>CC</span> and <span class=prog>CXX</span>.
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For example,
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<div class=code>
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<code>
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tar -zxvf crux-x.xx.Source.tar.gz
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</div>
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A new directory named <span class=file>crux-x.xx.Source</span> will be
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created and a long list of files will stream by as they are being put
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created, and a long list of files will stream by as they are being put
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into the new directory.
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<p/>
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</li>
@@ -388,8 +388,8 @@ <h3>Building Crux From Source on MacOS</h3>
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</div>
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<p/>
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where <span class=file>&lt;install directory&gt;</span> is
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the location where you wish to install the <span class=prog>crux</span> programs.
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If you want <span class=prog>crux</span> to go in <span class=file>$HOME/bin</span>,
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the location where you wish to install the <span class=prog>Crux</span> programs.
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If you want <span class=prog>Crux</span> to go in <span class=file>$HOME/bin</span>,
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then <span class=file>&lt;install directory&gt;</span> would be <span class=file>$HOME</span>.
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The installation process will automatically put the programs in a directory called
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<span class=file>bin</span>.
@@ -414,7 +414,7 @@ <h3>Building Crux From Source on MacOS</h3>
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</code>
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</div>
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<p/>
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The <span class=prog>crux</span> programs are
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The <span class=prog>Crux</span> programs are
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in the <span class=file>bin</span> subdirectory
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of the
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<span class=file>&lt;install directory&gt;</span>
@@ -466,7 +466,7 @@ <h3>Setting the PATH on Linux and MacOS</h3>
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<p>Try '<span class=code>echo $PATH</span>' again to see that the
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change was made. <em>&lt;install directory&gt;/bin</em> should be at the end of the
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list. Now you can
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run the <span class=prog>crux</span> programs by just typing their
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run the <span class=prog>Crux</span> programs by just typing their
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names. Try this.</p>
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<div class=code><code>
@@ -507,7 +507,7 @@ <h3>Installing Pre-compiled Crux Binaries on Windows</h3>
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You should now have a new directory,
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<span class=file>crux-x.xx</span>,
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with two subdirectories <span class=file>bin</span>, and <span
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class=file>doc</span>. The <span class=prog>crux</span> programs are
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class=file>doc</span>. The <span class=prog>Crux</span> programs are
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in the <span class=file>bin</span> directory. You may want to move
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these files somewhere
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more convenient for you, but otherwise, that completes the
@@ -615,7 +615,7 @@ <h3>Building Crux From Source on Windows</h3>
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</div>
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<p/>
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where <span class=file>&lt;install directory&gt;</span> is
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the location where you wish to install the <span class=prog>crux</span> programs.
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the location where you wish to install the <span class=prog>Crux</span> programs.
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Note that, somewhat confusingly, Visual Studio 2019 is version 16.
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<p/>
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If you wish to disable support for vendor specific file formats,

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