@@ -78,8 +78,8 @@ <h3>Downloading</h3>
7878 from the < a href ="http://crux.ms/download.html "> download page</ a > .
7979 < p />
8080 < ol >
81- < li > click on the list box under "Choose Download Type", and select the distribution
82- you want. Available choices are:
81+ < li > Click on the list box under "Choose Download Type" and select the distribution
82+ you want. Available choices are
8383 < ul >
8484 < li > Linux X86-64</ li >
8585 < li > MacOS X86-64</ li >
@@ -103,7 +103,7 @@ <h3>Downloading</h3>
103103 < p />
104104 Click on the button labeled "I agree to the licensing terms,
105105 download release x.x of Crux" to download the latest stable release
106- of crux .
106+ of Crux .
107107 </ dd >
108108 < dt >
109109 < p />
@@ -124,14 +124,14 @@ <h3>Downloading</h3>
124124 < h3 > Linux</ h3 >
125125 < h3 > Installing Pre-compiled Crux Binaries on Linux</ h3 >
126126 < ul >
127- < li > The current Linux binary of Crux is compiled on Ubuntu 22.04 for X86-64,
127+ < li > The current Linux binary of Crux is compiled on Ubuntu 22.04 for X86-64
128128 but should work on most Linux distributions.
129129 It requires that version 2.39 or later of the C runtime library be installed.
130130 You can determine which version of the C runtime library is installed
131131 by running
132132 < div class =code > < code >
133133 ldd --version
134- </ code > </ div >
134+ </ code > </ div > .
135135 < p />
136136 </ li >
137137
@@ -152,11 +152,11 @@ <h3>Installing Pre-compiled Crux Binaries on Linux</h3>
152152 You should now have a new directory,
153153 < span class =file > crux-x.xx.Linux.x86_64</ span > ,
154154 with two subdirectories, < span class =file > bin</ span > and < span
155- class =file > doc</ span > . The < span class =prog > crux </ span > programs are
155+ class =file > doc</ span > . The < span class =prog > Crux </ span > programs are
156156 in the < span class =file > bin</ span > directory. You may want to move
157157 these files somewhere
158158 more convenient for you, but otherwise, that completes the
159- installation! Skip ahead to
159+ installation. Skip ahead to
160160 < a href ="#linux_path "> Setting the PATH on Linux and MacOS</ a >
161161 for notes on how to run the executables.
162162 </ ul >
@@ -176,14 +176,14 @@ <h3>Building Crux From Source on Linux</h3>
176176 < li > < code > git</ code > </ li >
177177 </ ul >
178178 < p />
179- Building < span class =prog > crux </ span > also requires the
179+ Building < span class =prog > Crux </ span > also requires the
180180 < a href ="http://proteowizard.sourceforge.net "> < span class =prog > Proteowizard</ span > </ a >
181181 and
182182 < a href ="http://percolator.ms "> < span class =prog > Percolator</ span > </ a >
183183 libraries.
184184 These will automatically be copied from the < span class =prog > Proteowizard</ span >
185185 and < span class =prog > Percolator</ span >
186- repositories and statically linked into < span class =prog > crux </ span > .
186+ repositories and statically linked into < span class =prog > Crux </ span > .
187187 </ li >
188188
189189 < p />
@@ -226,8 +226,8 @@ <h3>Building Crux From Source on Linux</h3>
226226 </ div >
227227 < p />
228228 where < span class =file > <install directory></ span > is
229- the location where you wish to install the < span class =prog > crux </ span > programs.
230- If you want < span class =prog > crux </ span > to go in < span class =file > $HOME/bin</ span > ,
229+ the location where you wish to install the < span class =prog > Crux </ span > programs.
230+ If you want < span class =prog > Crux </ span > to go in < span class =file > $HOME/bin</ span > ,
231231 then < span class =file > <install directory></ span > would be < span class =file > $HOME</ span > .
232232 The installation process will automatically put the programs in a directory called
233233 < span class =file > bin</ span > .
@@ -253,7 +253,7 @@ <h3>Building Crux From Source on Linux</h3>
253253 </ code >
254254 </ div >
255255 < p />
256- The < span class =prog > crux </ span > programs are
256+ The < span class =prog > Crux </ span > programs are
257257 in the < span class =file > bin</ span > subdirectory
258258 of the
259259 < span class =file > <install directory></ span >
@@ -293,7 +293,7 @@ <h3>Installing Pre-compiled Crux Binaries on MacOS</h3>
293293 You should now have a new directory,
294294 < span class =file > crux-x.xx.Darwin.x86_64</ span > ,
295295 with two subdirectories < span class =file > bin</ span > , and < span
296- class =file > doc</ span > . The < span class =prog > crux </ span > programs are
296+ class =file > doc</ span > . The < span class =prog > Crux </ span > programs are
297297 in the < span class =file > bin</ span > directory. You may want to move
298298 these files somewhere
299299 more convenient for you, but otherwise, that completes the
@@ -317,25 +317,25 @@ <h3>Building Crux From Source on MacOS</h3>
317317 version of tar)</ li >
318318 </ ul >
319319 < p />
320- Building < span class =prog > crux </ span > also requires the
320+ Building < span class =prog > Crux </ span > also requires the
321321 < a href ="http://proteowizard.sourceforge.net "> < span class =prog > Proteowizard</ span > </ a >
322322 and
323323 < a href ="http://percolator.ms "> < span class =prog > Percolator</ span > </ a >
324324 libraries.
325325 These will automatically be copied from the < span class =prog > Proteowizard</ span >
326326 and < span class =prog > Percolator</ span >
327- repositories and statically linked into < span class =prog > crux </ span > .
327+ repositories and statically linked into < span class =prog > Crux </ span > .
328328 < p />
329329 Building < span class =prog > Crux</ span > on MacOS requires a current version of
330330 < span class =prog > XCode</ span > , and the XCode command line tools.
331331 Earlier versions of < span class =prog > Crux</ span >
332332 had to be built using the GCC compilers,
333333 which are not supported by Apple.
334- If you have the both the GCC and Apple compilers installed, you'll need to
334+ If you have both the GCC and Apple compilers installed, you'll need to
335335 adjust the < span class =prog > PATH</ span > environment variable so that the
336336 Apple compilers are found first.
337337 Alternatively, you can specify which compilers should be used by setting
338- the < span class =prog > CC</ span > , and < span class =prog > CXX</ span > .
338+ the environment variables < span class =prog > CC</ span > and < span class =prog > CXX</ span > .
339339 For example,
340340 < div class =code >
341341 < code >
@@ -364,7 +364,7 @@ <h3>Building Crux From Source on MacOS</h3>
364364 tar -zxvf crux-x.xx.Source.tar.gz
365365 </ div >
366366 A new directory named < span class =file > crux-x.xx.Source</ span > will be
367- created and a long list of files will stream by as they are being put
367+ created, and a long list of files will stream by as they are being put
368368 into the new directory.
369369 < p />
370370 </ li >
@@ -388,8 +388,8 @@ <h3>Building Crux From Source on MacOS</h3>
388388 </ div >
389389 < p />
390390 where < span class =file > <install directory></ span > is
391- the location where you wish to install the < span class =prog > crux </ span > programs.
392- If you want < span class =prog > crux </ span > to go in < span class =file > $HOME/bin</ span > ,
391+ the location where you wish to install the < span class =prog > Crux </ span > programs.
392+ If you want < span class =prog > Crux </ span > to go in < span class =file > $HOME/bin</ span > ,
393393 then < span class =file > <install directory></ span > would be < span class =file > $HOME</ span > .
394394 The installation process will automatically put the programs in a directory called
395395 < span class =file > bin</ span > .
@@ -414,7 +414,7 @@ <h3>Building Crux From Source on MacOS</h3>
414414 </ code >
415415 </ div >
416416 < p />
417- The < span class =prog > crux </ span > programs are
417+ The < span class =prog > Crux </ span > programs are
418418 in the < span class =file > bin</ span > subdirectory
419419 of the
420420 < span class =file > <install directory></ span >
@@ -466,7 +466,7 @@ <h3>Setting the PATH on Linux and MacOS</h3>
466466 < p > Try '< span class =code > echo $PATH</ span > ' again to see that the
467467 change was made. < em > <install directory>/bin</ em > should be at the end of the
468468 list. Now you can
469- run the < span class =prog > crux </ span > programs by just typing their
469+ run the < span class =prog > Crux </ span > programs by just typing their
470470 names. Try this.</ p >
471471
472472 < div class =code > < code >
@@ -507,7 +507,7 @@ <h3>Installing Pre-compiled Crux Binaries on Windows</h3>
507507 You should now have a new directory,
508508 < span class =file > crux-x.xx</ span > ,
509509 with two subdirectories < span class =file > bin</ span > , and < span
510- class =file > doc</ span > . The < span class =prog > crux </ span > programs are
510+ class =file > doc</ span > . The < span class =prog > Crux </ span > programs are
511511 in the < span class =file > bin</ span > directory. You may want to move
512512 these files somewhere
513513 more convenient for you, but otherwise, that completes the
@@ -615,7 +615,7 @@ <h3>Building Crux From Source on Windows</h3>
615615 </ div >
616616 < p />
617617 where < span class =file > <install directory></ span > is
618- the location where you wish to install the < span class =prog > crux </ span > programs.
618+ the location where you wish to install the < span class =prog > Crux </ span > programs.
619619 Note that, somewhat confusingly, Visual Studio 2019 is version 16.
620620 < p />
621621 If you wish to disable support for vendor specific file formats,
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