Merge branch 'develop'

- Remove debugging from meta module

Author: adamd3

modules/metadata.nf

@@ -11,6 +11,16 @@ process MAKE_META_FILE {
 
     script:
     """
+    echo "Starting make_meta_file.py"
+    echo "Current directory: \$(pwd)"
+    echo "Files before:"
+    ls -la
+    echo "Running: make_meta_file.py $sample_file ${params.data_dir} sample_metadata.tsv"
     make_meta_file.py $sample_file ${params.data_dir} sample_metadata.tsv
+    echo "Exit code: \$?"
+    echo "Files after:"
+    ls -la
+    echo "Checking for target file:"
+    ls -la sample_metadata.tsv || echo "sample_metadata.tsv not found"
     """
 }