Skip to content

Commit 73c605a

Browse files
adoebleyadoebley
authored
Merge pull request #5 from adoebley/development
Development
2 parents 796b059 + 9c73e9f commit 73c605a

File tree

1,061 files changed

+770584
-4213627
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

1,061 files changed

+770584
-4213627
lines changed

‎Ref/encode_unified_GRCh38_exclusion_list.bed‎

Lines changed: 910 additions & 0 deletions
Large diffs are not rendered by default.

‎Ref/genome_GC_frequency/k100_minus_exclusion_lists.mappable_regions.hg38.100bp.GC_frequency.txt‎

Lines changed: 102 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,102 @@
1+
length num_GC number_of_fragments
2+
100 0 207300
3+
100 1 166450
4+
100 2 187592
5+
100 3 218742
6+
100 4 245874
7+
100 5 255466
8+
100 6 279318
9+
100 7 304486
10+
100 8 346458
11+
100 9 397702
12+
100 10 478668
13+
100 11 596572
14+
100 12 786200
15+
100 13 1063144
16+
100 14 1523994
17+
100 15 2261496
18+
100 16 3411018
19+
100 17 5153226
20+
100 18 7741694
21+
100 19 11451064
22+
100 20 16551266
23+
100 21 23292226
24+
100 22 31812482
25+
100 23 42218400
26+
100 24 54427388
27+
100 25 68164526
28+
100 26 82943330
29+
100 27 98306298
30+
100 28 113798558
31+
100 29 128736650
32+
100 30 142740590
33+
100 31 155428390
34+
100 32 166355860
35+
100 33 175418826
36+
100 34 182236100
37+
100 35 186866626
38+
100 36 189145882
39+
100 37 189195888
40+
100 38 186992542
41+
100 39 182924054
42+
100 40 177373756
43+
100 41 170813606
44+
100 42 163806466
45+
100 43 156837276
46+
100 44 150407136
47+
100 45 144836308
48+
100 46 140222352
49+
100 47 136247132
50+
100 48 131864086
51+
100 49 126229652
52+
100 50 118914212
53+
100 51 110305686
54+
100 52 101304760
55+
100 53 92863882
56+
100 54 85496894
57+
100 55 79053884
58+
100 56 72929482
59+
100 57 66363810
60+
100 58 59010338
61+
100 59 50951834
62+
100 60 42856630
63+
100 61 35416302
64+
100 62 29024318
65+
100 63 23746998
66+
100 64 19413942
67+
100 65 15803564
68+
100 66 12853444
69+
100 67 10425012
70+
100 68 8418086
71+
100 69 6788178
72+
100 70 5461738
73+
100 71 4393856
74+
100 72 3562894
75+
100 73 2911740
76+
100 74 2409498
77+
100 75 2037588
78+
100 76 1758426
79+
100 77 1536100
80+
100 78 1347092
81+
100 79 1161276
82+
100 80 988980
83+
100 81 841224
84+
100 82 706920
85+
100 83 576638
86+
100 84 441776
87+
100 85 321354
88+
100 86 219766
89+
100 87 147496
90+
100 88 102632
91+
100 89 68112
92+
100 90 44410
93+
100 91 28404
94+
100 92 16444
95+
100 93 10290
96+
100 94 5486
97+
100 95 2862
98+
100 96 1634
99+
100 97 802
100+
100 98 392
101+
100 99 182
102+
100 100 186

‎Ref/genome_GC_frequency/k100_minus_exclusion_lists.mappable_regions.hg38.101bp.GC_frequency.txt‎

Lines changed: 103 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,103 @@
1+
length num_GC number_of_fragments
2+
101 0 204146
3+
101 1 163926
4+
101 2 184366
5+
101 3 214125
6+
101 4 241509
7+
101 5 250510
8+
101 6 273140
9+
101 7 295977
10+
101 8 336123
11+
101 9 382854
12+
101 10 457024
13+
101 11 565077
14+
101 12 736885
15+
101 13 986194
16+
101 14 1400183
17+
101 15 2057086
18+
101 16 3092284
19+
101 17 4660975
20+
101 18 7003505
21+
101 19 10371630
22+
101 20 15054318
23+
101 21 21278031
24+
101 22 29229411
25+
101 23 38992774
26+
101 24 50576435
27+
101 25 63742742
28+
101 26 78062857
29+
101 27 93074838
30+
101 28 108347160
31+
101 29 123268229
32+
101 30 137384125
33+
101 31 150320189
34+
101 32 161679509
35+
101 33 171253056
36+
101 34 178717512
37+
101 35 184019269
38+
101 36 187043647
39+
101 37 187912336
40+
101 38 186517826
41+
101 39 183128210
42+
101 40 178187376
43+
101 41 172053749
44+
101 42 165247579
45+
101 43 158332487
46+
101 44 151704694
47+
101 45 145829158
48+
101 46 140886631
49+
101 47 136775790
50+
101 48 132915008
51+
101 49 128154307
52+
101 50 121938817
53+
101 51 114076669
54+
101 52 105265721
55+
101 53 96425968
56+
101 54 88432069
57+
101 55 81528985
58+
101 56 75381713
59+
101 57 69210494
60+
101 58 62451214
61+
101 59 54886992
62+
101 60 46861487
63+
101 61 39135030
64+
101 62 32225497
65+
101 63 26444629
66+
101 64 21691007
67+
101 65 17752519
68+
101 66 14470365
69+
101 67 11798879
70+
101 68 9572404
71+
101 69 7746393
72+
101 70 6254111
73+
101 71 5040799
74+
101 72 4072423
75+
101 73 3317246
76+
101 74 2723475
77+
101 75 2268190
78+
101 76 1934749
79+
101 77 1679884
80+
101 78 1473729
81+
101 79 1290270
82+
101 80 1111313
83+
101 81 946425
84+
101 82 804541
85+
101 83 674039
86+
101 84 543866
87+
101 85 414141
88+
101 86 299861
89+
101 87 204287
90+
101 88 137625
91+
101 89 96245
92+
101 90 63215
93+
101 91 41399
94+
101 92 26489
95+
101 93 15326
96+
101 94 9529
97+
101 95 5076
98+
101 96 2696
99+
101 97 1523
100+
101 98 760
101+
101 99 362
102+
101 100 177
103+
101 101 175

‎Ref/genome_GC_frequency/k100_minus_exclusion_lists.mappable_regions.hg38.102bp.GC_frequency.txt‎

Lines changed: 104 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,104 @@
1+
length num_GC number_of_fragments
2+
102 0 201092
3+
102 1 161410
4+
102 2 181312
5+
102 3 209709
6+
102 4 237169
7+
102 5 245736
8+
102 6 267270
9+
102 7 288201
10+
102 8 326214
11+
102 9 369109
12+
102 10 437151
13+
102 11 536138
14+
102 12 692072
15+
102 13 917920
16+
102 14 1287859
17+
102 15 1876483
18+
102 16 2805030
19+
102 17 4219319
20+
102 18 6337869
21+
102 19 9395218
22+
102 20 13685064
23+
102 21 19427153
24+
102 22 26824494
25+
102 23 35984464
26+
102 24 46944710
27+
102 25 59523873
28+
102 26 73380909
29+
102 27 88000425
30+
102 28 103037418
31+
102 29 117866207
32+
102 30 132066442
33+
102 31 145195883
34+
102 32 156916091
35+
102 33 166962734
36+
102 34 175017773
37+
102 35 180996859
38+
102 36 184702912
39+
102 37 186359762
40+
102 38 185775215
41+
102 39 183119844
42+
102 40 178780275
43+
102 41 173133788
44+
102 42 166625145
45+
102 43 159803488
46+
102 44 153101005
47+
102 45 146941152
48+
102 46 141698930
49+
102 47 137303474
50+
102 48 133571999
51+
102 49 129516278
52+
102 50 124292399
53+
102 51 117428401
54+
102 52 109143264
55+
102 53 100289723
56+
102 54 91756166
57+
102 55 84255944
58+
102 56 77790739
59+
102 57 71776848
60+
102 58 65489951
61+
102 59 58510552
62+
102 60 50804077
63+
102 61 42951881
64+
102 62 35679352
65+
102 63 29357046
66+
102 64 24140935
67+
102 65 19842823
68+
102 66 16254148
69+
102 67 13280166
70+
102 68 10844439
71+
102 69 8805658
72+
102 70 7137999
73+
102 71 5770744
74+
102 72 4661473
75+
102 73 3782432
76+
102 74 3093847
77+
102 75 2553210
78+
102 76 2142562
79+
102 77 1842000
80+
102 78 1606710
81+
102 79 1413597
82+
102 80 1237600
83+
102 81 1063434
84+
102 82 906334
85+
102 83 769180
86+
102 84 641408
87+
102 85 512774
88+
102 86 388220
89+
102 87 279445
90+
102 88 190206
91+
102 89 128484
92+
102 90 90101
93+
102 91 58794
94+
102 92 38538
95+
102 93 24770
96+
102 94 14272
97+
102 95 8805
98+
102 96 4719
99+
102 97 2543
100+
102 98 1418
101+
102 99 720
102+
102 100 334
103+
102 101 174
104+
102 102 164

0 commit comments

Comments
 (0)