v9.3.0 #65
Workflow file for this run
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| # This workflow builds a release version of Pathling and deploys it to Maven Central and PyPI. | |
| name: Release | |
| # This workflow is only run when a release is published. | |
| on: | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| jobs: | |
| release-maven: | |
| # Only run for main library releases (v*.*.*), not server or helm releases. | |
| if: github.event_name == 'workflow_dispatch' || (startsWith(github.ref_name, 'v') && !contains(github.ref_name, '/')) | |
| name: Release to Maven Central | |
| environment: maven-central | |
| runs-on: ubuntu-latest | |
| permissions: | |
| id-token: write # Required for AWS OIDC authentication. | |
| contents: write # Required to upload release assets. | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| submodules: recursive | |
| - name: Set up build environment | |
| uses: ./.github/actions/setup-build-tools | |
| with: | |
| java: "true" | |
| r: "true" | |
| r-pandoc: "true" | |
| python: "true" | |
| bun: "true" | |
| spark: "true" | |
| sonar-cache: "true" | |
| - name: Install GPG key | |
| env: | |
| GPG_KEY: ${{ secrets.GPG_KEY }} | |
| run: | | |
| echo "$GPG_KEY" | gpg --batch --import | |
| gpg --list-secret-keys --keyid-format LONG | |
| - name: Configure Maven settings | |
| uses: s4u/maven-settings-action@v3.1.0 | |
| with: | |
| servers: | | |
| [{ | |
| "id": "central", | |
| "username": "${{ secrets.OSSRH_USERNAME }}", | |
| "password": "${{ secrets.OSSRH_PASSWORD }}" | |
| }] | |
| # Release won't be possible if there are outstanding vulnerabilities of medium severity or | |
| # higher as reported by Trivy. | |
| - name: Run security scan | |
| uses: ./.github/actions/trivy-scan | |
| - name: Run deploy goal | |
| env: | |
| R_KEEP_PKG_SOURCE: yes | |
| SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
| MAVEN_GPG_PASSPHRASE: ${{ secrets.GPG_PASSPHRASE }} | |
| run: | | |
| mvn --batch-mode deploy \ | |
| org.sonarsource.scanner.maven:sonar-maven-plugin:sonar \ | |
| -Dsonar.projectKey=aehrc_pathling -Dsonar.organization=aehrc \ | |
| -Dsonar.host.url=https://sonarcloud.io \ | |
| -Dsonar.sarifReportPaths=trivy-results.sarif \ | |
| -pl '!benchmark' -Pdocs,mavenRelease,check | |
| timeout-minutes: 60 | |
| - name: Upload test artifacts | |
| if: always() | |
| uses: ./.github/actions/upload-test-artifacts | |
| with: | |
| include-jars: "true" | |
| include-python: "true" | |
| include-r: "true" | |
| include-site: "true" | |
| - name: Configure AWS credentials | |
| uses: aws-actions/configure-aws-credentials@v4 | |
| with: | |
| role-to-assume: arn:aws:iam::865780493209:role/PathlingBenchmarkUpload | |
| aws-region: ap-southeast-2 | |
| - name: Extract major version | |
| id: extract-version | |
| run: | | |
| # Extract version from tag (e.g. v8.0.1 -> v8). | |
| VERSION_TAG="${{ github.ref_name }}" | |
| MAJOR_VERSION=$(echo "$VERSION_TAG" | sed -E 's/^(v[0-9]+).*/\1/') | |
| echo "major_version=${MAJOR_VERSION}" >> $GITHUB_OUTPUT | |
| echo "Extracted major version: ${MAJOR_VERSION}" | |
| - name: Upload SQL on FHIR test report to S3 | |
| run: aws s3 cp fhirpath/target/fhir-view-compliance-test.json s3://pathling-benchmark/test-reports/${{ steps.extract-version.outputs.major_version }}/sof-test-results.json | |
| - name: Upload release assets | |
| run: | | |
| gh release upload ${{ github.ref_name }} \ | |
| --clobber \ | |
| library-runtime/target/library-runtime-*.jar \ | |
| lib/python/target/py-dist/pathling-*.whl \ | |
| lib/R/target/pathling_*.tar.gz | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| release-pypi: | |
| name: Release to PyPI | |
| environment: pypi | |
| runs-on: ubuntu-latest | |
| needs: release-maven | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| # This is required so that git-commit-id-plugin can find the latest tag. | |
| fetch-depth: 0 | |
| submodules: recursive | |
| - name: Set up build environment | |
| uses: ./.github/actions/setup-build-tools | |
| with: | |
| java: "true" | |
| r: "true" | |
| r-pandoc: "true" | |
| python: "true" | |
| spark: "true" | |
| - name: Run deploy goal | |
| env: | |
| TWINE_USERNAME: ${{ secrets.TWINE_USERNAME }} | |
| TWINE_PASSWORD: ${{ secrets.TWINE_PASSWORD }} | |
| R_KEEP_PKG_SOURCE: yes | |
| run: | | |
| mvn --batch-mode deploy \ | |
| -pl lib/python -am \ | |
| -DskipTests -PpythonRelease | |
| timeout-minutes: 30 | |
| upload-to-dap: | |
| name: Upload source code to CSIRO DAP | |
| environment: csiro-dap | |
| runs-on: [self-hosted, Linux] | |
| needs: [release-maven, release-pypi] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Download source code and upload to CSIRO DAP | |
| run: python .github/scripts/dap_upload.py | |
| env: | |
| GITHUB_REPOSITORY: ${{ github.repository }} | |
| GITHUB_REF_NAME: ${{ github.ref_name }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| DAP_USERNAME: ${{ secrets.DAP_USERNAME }} | |
| DAP_PASSWORD: ${{ secrets.DAP_PASSWORD }} | |
| DAP_BASE_URL: https://data.csiro.au | |
| COLLECTION_PID: csiro:49524 | |
| timeout-minutes: 20 |