Add directory creation step to EC2 installation instructions

- Added step 2 to create local directories for MCP server logs and runtime data
- Updated subsequent step numbers to maintain correct sequence
- Includes creation of /opt/mcp-gateway/servers, /opt/mcp-gateway/auth_server, and /var/log/mcp-gateway directories
- Copies necessary configuration files to appropriate locations

Author: aarora79

README.md

@@ -260,7 +260,16 @@ The deployment includes these containers:
     cd mcp-gateway-registry
     ```
 
-2. **Configure environment variables:**
+2. **Create local directories for saving MCP server logs and run-time data:**
+   ```bash
+   sudo mkdir -p /opt/mcp-gateway/servers
+   sudo cp -r registry/servers /opt/mcp-gateway/
+   sudo mkdir -p /opt/mcp-gateway/auth_server
+   sudo cp auth_server/scopes.yml /opt/mcp-gateway/auth_server/scopes.yml
+   sudo mkdir /var/log/mcp-gateway
+   ```
+
+3. **Configure environment variables:**
    ```bash
    # Copy the template and edit with your values
    cp .env.template .env
@@ -278,7 +287,7 @@ The deployment includes these containers:
    - `POLYGON_API_KEY`: For financial data tools (get from [Polygon.io](https://polygon.io/dashboard/signup))
    - `SECRET_KEY`: Auto-generated by build script if not provided
 
-3. **Deploy with the build and run script:**
+4. **Deploy with the build and run script:**
    ```bash
    ./build_and_run.sh
    ```
@@ -290,7 +299,7 @@ The deployment includes these containers:
    - Start all services in the correct order
    - Verify service health and display status
 
-4. **Access the Registry:**
+5. **Access the Registry:**
    Navigate to `http://localhost:7860` and you will have two authentication options:
 
    **Option 1 - Amazon Cognito (Recommended for Production):**