This is a crash-course in bioinformatics for the analysis of Oxford Nanopore Technology Sequencing Data, specifically viral RNA.
- Basics of Linux
- Terminology of high throughput sequencing and bioinformatics
- Typical viral RNA ONT workflow
- Custom build
- Containerised options
- How to build and annotate a phylogenetic tree
- How to perform most sequnecing analysis in R statistics
- A GitHub account
- Access to the UCD Sonic HPC
- VSCode or a similar platform for ssh tunnelling
- WinSCP or FileZilla for easy file transfer
- A positive attitude and sweet treats to get you through yet another conda install