Support numpy 2.x (#6899)

This did not require any code changes, and we still support numpy v1 for now.

* Allow numpy 2.x in pyproject.toml, update uv.lock
* Add ruff rule to not use numpy API deprecated for numpy v1
As mentioned in
https://numpy.org/devdocs/numpy_2_0_migration_guide.html#ruff-plugin
---------

Co-authored-by: Alexander Goscinski <[email protected]>

Author: danielhollas

docs/source/nitpick-exceptions

@@ -157,6 +157,7 @@ py:class disk_objectstore.backup_utils.BackupManager
 
 py:class frozenset
 
+py:class numpy.bool
 py:class numpy.bool_
 py:class numpy.ndarray
 py:class np.ndarray

environment.yml

@@ -22,7 +22,7 @@ dependencies:
 - jinja2~=3.0
 - kiwipy[rmq]~=0.8.4
 - importlib-metadata~=6.0
-- numpy~=1.21
+- numpy<3,>=1.21
 - paramiko~=3.0
 - pgsu~=0.3.0
 - psutil~=5.6

pyproject.toml

@@ -35,7 +35,7 @@ dependencies = [
   'jinja2~=3.0',
   'kiwipy[rmq]~=0.8.4',
   'importlib-metadata~=6.0',
-  'numpy~=1.21',
+  'numpy>=1.21,<3',
   'paramiko~=3.0',
   'pgsu~=0.3.0',
   'psutil~=5.6',
@@ -446,7 +446,8 @@ select = [
   'PLE',  # pylint-error
   'PLR',  # pylint-refactor
   'PLW',  # pylint-warning
-  'RUF'  # ruff
+  'RUF',  # ruff
+  'NPY201'  # numpy compatibility
 ]
 
 [tool.tox]