updating figures

Author: alexpiet

alex_dev_script.py

@@ -1,7 +1,7 @@
 import os
 import pickle
 os.chdir('/home/alex.piet/codebase/behavior/licking_behavior')
-os.chdir('/Users/alex.piet/licking_behavior')
+#os.chdir('/Users/alex.piet/licking_behavior')
 from alex_utils import load
 import matplotlib.pyplot as plt
 import fit_tools
@@ -34,10 +34,10 @@
 reward_params   = model.res.x[17:37]
 flash_params    = model.res.x[37:52]
 cflash_params   = model.res.x[52:67]
-params      = [flash_params, cflash_params,reward_params,post_lick_params]
-durations   = [model.flash_duration,model.change_flash_duration,model.reward_duration,model.post_lick_duration]
-sigmas      = [model.flash_sigma,model.change_flash_sigma,model.reward_sigma,model.post_lick_sigma]
-events      = [[0, 75,150,225,300,375,450,525],[75],[109],[109, 125,141,157,172, 190,205,230]]
+params      = [model.res.x[0], flash_params, cflash_params,reward_params,post_lick_params]
+durations   = [0,model.flash_duration,model.change_flash_duration,model.reward_duration,model.post_lick_duration]
+sigmas      = [0,model.flash_sigma,model.change_flash_sigma,model.reward_sigma,model.post_lick_sigma]
+events      = [[],[0, 75,150,225,300,375,450,525],[75],[109],[109, 125,141,157,172, 190,205,230]]
 plt.close('all')
 reload(plot_tools)
 plot_tools.plot_components(params,durations,sigmas,events,5,model.res.x[0])
@@ -57,6 +57,8 @@
 plt.close('all')
 fit_tools.compare_model(model.res.latent, time_vec, licks, stop_time, rewards=rewards, flashes=flashes, change_flashes=change_flashes, running_speed = running_speed[:-1])
 
+
+
 # Sanity Checks
 import analysis_tools as at
 at.compare_all_inter_licks()

analysis_tools.py

@@ -167,10 +167,13 @@ def compare_all_inter_licks(IDS=None,plot_this=True):
         plt.plot(models, datas, 'ko',alpha = .3)
         plt.xlim(0.1,.2)
         plt.ylim(0.1,.2)
-        plt.ylabel('data')
-        plt.xlabel('model')
+        plt.ylabel('Average ILI in Data (s)',fontsize=20)
+        plt.xlabel('Average ILI in Model (s)',fontsize=20)
         plt.plot([0,1],[0,1], 'k--',alpha = .2)
-        plt.title('Interlick Intervals')
+        plt.title('Interlick Intervals',fontsize=24)
+        ax = plt.gca()
+        ax.xaxis.set_tick_params(labelsize=16)
+        ax.yaxis.set_tick_params(labelsize=16)
     return models, datas 
 
 def compare_dist(IDS=None, plot_this=True,variable='licks'):