benchmark update

Author: alexandrutomescu

benchmarks/BENCHMARK_VERSION

@@ -1 +1 @@
-1.0.5
+1.0.6

benchmarks/benchmark_minflowdecomp.py

@@ -45,6 +45,16 @@
     'default': {
         # Default settings
     },
+    'given_weights+min_gen_set': {
+        'optimize_with_greedy': False,
+        'optimize_with_flow_safe_paths': False,
+        'optimize_with_safe_paths': False,
+        'optimize_with_safe_sequences': False,
+        'optimize_with_safe_zero_edges': False,
+        'optimize_with_symmetry_breaking': True,
+        'use_min_gen_set_lowerbound': True,
+        'optimize_with_given_weights': True,
+    },
 }
 
 

benchmarks/run_Mouse.PacBio_1_perwidth.sh

@@ -26,7 +26,7 @@ echo ""
 python benchmark_minflowdecomp.py \
     --datasets datasets/esa2025/Mouse.PacBio_reads_1_perwidth.flow_corrected.grp.gz \
     --min-width 1 \
-    --max-width 6 \
+    --max-width 9 \
     --time-limit "$TIME_LIMIT"
 
 echo ""

docs/benchmarks.md

@@ -1,7 +1,10 @@
+---
+hide:
+  - toc
+---
+
 # Benchmarks
 
 This page shows the latest benchmark results for the MinFlowDecomp solver on small test datasets.
 
-## Dataset: Mouse.PacBio_reads_1_perwidth
-
 --8<-- "benchmarks/results-docs/Mouse.PacBio_reads_1_perwidth.flow_corrected.grp.md"