-
Notifications
You must be signed in to change notification settings - Fork 19
Expand file tree
/
Copy pathdeployment.py
More file actions
416 lines (368 loc) · 12.5 KB
/
deployment.py
File metadata and controls
416 lines (368 loc) · 12.5 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
from __future__ import annotations
import asyncio
import json
import os
import socket
import tempfile
from collections.abc import MutableSequence
from importlib.resources import files
from typing import cast
import asyncssh
import asyncssh.public_key
from jinja2 import Template
from streamflow.core import utils
from streamflow.core.context import StreamFlowContext
from streamflow.core.deployment import (
BindingFilter,
Connector,
DeploymentConfig,
DeploymentManager,
ExecutionLocation,
Target,
WrapsConfig,
)
from streamflow.core.utils import random_name
from streamflow.core.workflow import Job
from streamflow.deployment import DefaultDeploymentManager
from tests.utils.data import get_data_path
def _create_template_file(content: str = "") -> str:
content = content or "#!/bin/sh\n\n{{streamflow_command}}"
with tempfile.NamedTemporaryFile(mode="w", delete=False) as f_service:
f_service.write(content)
return f_service.name
def _get_free_tcp_port() -> int:
"""
Return a free TCP port to be used for publishing services.
"""
tcp = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
tcp.bind(("", 0))
addr, port = tcp.getsockname()
tcp.close()
return port
def get_aiotar_deployment_config(tar_format: str) -> DeploymentConfig:
workdir = os.path.join(
os.path.realpath(tempfile.gettempdir()), "streamflow-test", random_name()
)
os.makedirs(workdir, exist_ok=True)
return DeploymentConfig(
name=f"aiotar-{tar_format}",
type="aiotar",
config={"tar_format": tar_format, "transferBufferSize": 16},
external=False,
lazy=False,
workdir=workdir,
)
def get_deployment(deployment_t: str) -> str:
match deployment_t:
case "aiotar":
return "aiotar"
case "docker":
return "alpine-docker"
case "docker-wrapper":
return "alpine-docker-wrapper"
case "docker-compose":
return "alpine-docker-compose"
case "kubernetes":
return "alpine-kubernetes"
case "local":
return "__LOCAL__"
case "local-fs-volatile":
return "local-fs-volatile"
case "parameterizable_hardware":
return "custom-hardware"
case "singularity":
return "alpine-singularity"
case "slurm":
return "docker-slurm"
case "ssh":
return "linuxserver-ssh"
case _:
raise Exception(f"{deployment_t} deployment type not supported")
async def get_deployment_config(
_context: StreamFlowContext, deployment_t: str
) -> DeploymentConfig:
match deployment_t:
case "docker":
return get_docker_deployment_config()
case "docker-compose":
return get_docker_compose_deployment_config()
case "docker-wrapper":
return await get_docker_wrapper_deployment_config(_context)
case "kubernetes":
return get_kubernetes_deployment_config()
case "local":
return get_local_deployment_config()
case "local-fs-volatile":
return get_local_deployment_config(
name="local-fs-volatile",
workdir=os.path.join(
os.path.realpath(tempfile.gettempdir()),
"streamflow-test",
random_name(),
"test-fs-volatile",
),
)
case "parameterizable-hardware":
return get_parameterizable_hardware_deployment_config()
case "singularity":
return get_singularity_deployment_config()
case "slurm":
return await get_slurm_deployment_config(_context)
case "ssh":
return await get_ssh_deployment_config(_context)
case _:
raise Exception(f"{deployment_t} deployment type not supported")
def get_docker_compose_deployment_config():
return DeploymentConfig(
name="alpine-docker-compose",
type="docker-compose",
config={
"files": [
str(get_data_path("deployment", "docker-compose", "docker-compose.yml"))
],
"projectName": random_name(),
},
external=False,
lazy=False,
)
def get_docker_deployment_config():
return DeploymentConfig(
name="alpine-docker",
type="docker",
config={
"image": "alpine:3.16.2",
"volume": [
f"{get_local_deployment_config().workdir}:/tmp/streamflow",
f"{get_local_deployment_config().workdir}:/home/output",
],
},
external=False,
lazy=False,
workdir="/tmp/streamflow",
)
async def get_docker_wrapper_deployment_config(_context: StreamFlowContext):
docker_dind_deployment = DeploymentConfig(
name="docker-dind",
type="docker",
config={"image": "docker:27.3.1-dind-alpine3.20", "privileged": True},
external=False,
lazy=False,
)
await _context.deployment_manager.deploy(docker_dind_deployment)
await asyncio.sleep(5)
return DeploymentConfig(
name="alpine-docker-wrapper",
type="docker",
config={"image": "alpine:3.16.2"},
external=False,
lazy=False,
wraps=WrapsConfig(deployment="docker-dind"),
)
def get_failure_deployment_config():
return DeploymentConfig(
name="failure-test",
type="failure-connector",
config={"transferBufferSize": 0},
external=False,
lazy=True,
)
def get_kubernetes_deployment_config():
template = Template(files(__package__).joinpath("pod.jinja2").read_text("utf-8"))
with tempfile.NamedTemporaryFile(mode="w", delete=False) as f:
template.stream(name=utils.random_name()).dump(f.name)
return DeploymentConfig(
name="alpine-kubernetes",
type="kubernetes",
config={"files": [f.name]},
external=False,
lazy=False,
)
def get_local_deployment_config(
name: str | None = None, workdir: str | None = None
) -> DeploymentConfig:
workdir = workdir or os.path.join(
os.path.realpath(tempfile.gettempdir()), "streamflow-test", random_name()
)
os.makedirs(workdir, exist_ok=True)
return DeploymentConfig(
name=name or "__LOCAL__",
type="local",
config={},
external=True,
lazy=False,
workdir=workdir,
)
async def get_location(
_context: StreamFlowContext, deployment_t: str
) -> ExecutionLocation:
deployment = get_deployment(deployment_t)
service = get_service(_context, deployment_t)
connector = _context.deployment_manager.get_connector(deployment)
locations = await connector.get_available_locations(service=service)
return next(iter(locations.values())).location
def get_parameterizable_hardware_deployment_config():
workdir = os.path.join(
os.path.realpath(tempfile.gettempdir()), "streamflow-test", random_name()
)
os.makedirs(workdir, exist_ok=True)
return DeploymentConfig(
name="custom-hardware",
type="parameterizable-hardware",
config={},
external=True,
lazy=False,
workdir=workdir,
)
def get_service(_context: StreamFlowContext, deployment_t: str) -> str | None:
match deployment_t:
case (
"aiotar"
| "docker"
| "docker-wrapper"
| "local"
| "local-fs-volatile"
| "parameterizable-hardware"
| "singularity"
| "ssh"
):
return None
case "docker-compose":
return "alpine"
case "kubernetes":
return "sf-test"
case "slurm":
return "test"
case _:
raise Exception(f"{deployment_t} deployment type not supported")
def get_singularity_deployment_config():
return DeploymentConfig(
name="alpine-singularity",
type="singularity",
config={"image": "docker://alpine:3.16.2"},
external=False,
lazy=False,
)
async def get_slurm_deployment_config(_context: StreamFlowContext):
docker_compose_config = DeploymentConfig(
name="docker-compose-slurm",
type="docker-compose",
config={
"files": [str(get_data_path("deployment", "slurm", "docker-compose.yml"))],
"projectName": random_name(),
},
external=False,
)
await _context.deployment_manager.deploy(docker_compose_config)
return DeploymentConfig(
name="docker-slurm",
type="slurm",
config={
"services": {
"test": {"partition": "docker", "nodes": 2, "ntasksPerNode": 1},
"test_template": {
"file": _create_template_file(
"#!/bin/sh\n\necho 'I am a slurm service'\n{{streamflow_command}}"
)
},
}
},
external=False,
lazy=False,
wraps=WrapsConfig(deployment="docker-compose-slurm", service="slurmctld"),
)
async def get_ssh_deployment_config(_context: StreamFlowContext):
if config := cast(
DefaultDeploymentManager, _context.deployment_manager
).config_map.get("linuxserver-ssh"):
return config
skey = asyncssh.public_key.generate_private_key(
alg_name="ssh-rsa",
comment="streamflow-test",
key_size=4096,
)
public_key = skey.export_public_key().decode("utf-8")
with tempfile.NamedTemporaryFile(mode="w", delete=False) as f_key:
skey.write_private_key(f_key.name)
ssh_port = _get_free_tcp_port()
docker_config = DeploymentConfig(
name="linuxserver-ssh-docker",
type="docker",
config={
"image": "lscr.io/linuxserver/openssh-server",
"env": [f"PUBLIC_KEY={public_key}"],
"init": False,
"publish": [f"{ssh_port}:2222"],
},
external=False,
lazy=False,
)
await _context.deployment_manager.deploy(docker_config)
await asyncio.sleep(5)
return DeploymentConfig(
name="linuxserver-ssh",
type="ssh",
config={
"maxConcurrentSessions": 10,
"nodes": [
{
"checkHostKey": False,
"hostname": f"127.0.0.1:{ssh_port}",
"sshKey": f_key.name,
"username": "linuxserver.io",
"retries": 2,
"retryDelay": 5,
}
],
"services": {
"test_template": _create_template_file(
"#!/bin/sh\n\necho 'I am a ssh service'\n{{streamflow_command}}"
)
},
},
workdir="/tmp",
external=False,
lazy=False,
)
class CustomDeploymentManager(DeploymentManager):
def __init__(self, context: StreamFlowContext, my_arg: str) -> None:
super().__init__(context)
self.my_arg: str = my_arg
async def close(self) -> None:
raise NotImplementedError
@classmethod
def get_schema(cls) -> str:
return json.dumps(
{
"$schema": "https://json-schema.org/draft/2020-12/schema",
"$id": "https://streamflow.di.unito.it/schemas/tests/utils/deployment/custom_deployment_manager.json",
"type": "object",
"properties": {
"my_arg": {"type": "string", "description": "No description"}
},
"additionalProperties": False,
}
)
async def deploy(self, deployment_config: DeploymentConfig) -> None:
raise NotImplementedError
def get_connector(self, deployment_name: str) -> Connector | None:
raise NotImplementedError
async def undeploy(self, deployment_name: str) -> None:
raise NotImplementedError
async def undeploy_all(self) -> None:
raise NotImplementedError
class ReverseTargetsBindingFilter(BindingFilter):
async def get_targets(
self, job: Job, targets: MutableSequence[Target]
) -> MutableSequence[Target]:
return targets[::-1]
@classmethod
def get_schema(cls) -> str:
return json.dumps(
{
"$schema": "https://json-schema.org/draft/2020-12/schema",
"$id": "https://streamflow.di.unito.it/schemas/tests/utils/deployment/reverse_targets.json",
"type": "object",
"properties": {},
"additionalProperties": False,
}
)