Skip to content

feature request: print LB/PL/PU/SM tags only in @RG header line #159

@eboyden

Description

@eboyden

Is there a means to only print the LB / PL / PU / SM tags in the @RG header line along with the ID tag? As far as I can tell they are automatically printed to every line along with the RG tag, which produces files that are larger than necessary, and there is no way to disable this behavior. Every other aligner I've used only prints those tags to the header, and they are linked to individual reads via the ID / RG tags.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions