initial image

Author: akaszynski

Dockerfile

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+FROM jupyter/base-notebook:python-3.8.6
+
+MAINTAINER Alex Kaszynski "[email protected]"
+
+USER root
+
+RUN apt-get update \
+ && DEBIAN_FRONTEND="noninteractive" apt-get install  -yq --no-install-recommends \
+    libgl1-mesa-glx \
+    libglu1-mesa \
+    libsm6 \
+    xvfb \
+    libopengl0 \
+    libegl1 \
+    software-properties-common \
+    keyboard-configuration \
+    kmod \
+    libglvnd-dev \
+    pkg-config \
+    && apt-get clean && rm -rf /var/lib/apt/lists/*
+
+USER jovyan
+
+# setup the itkwidgets conda enviornment
+RUN conda update -n base conda
+COPY environment.yml labextensions.txt /tmp/
+RUN conda env update --name base --file /tmp/environment.yml
+RUN conda run conda install -y nodejs
+RUN conda run jupyter labextension install $(cat /tmp/labextensions.txt)
+
+# machine learning and additional plotting
+RUN pip install gym==0.17.3 \
+                tensorflow==2.3.1 \
+                numpy==1.18.5 \
+                itk-meshtopolydata==0.6.2 \
+                ipycanvas==0.6.0
+
+# NVIDIA...
+USER root
+COPY NVIDIA-Linux-x86_64-450.51.06.run nvidia_drivers.run
+RUN ./nvidia_drivers.run -s --no-kernel-module \
+    && rm nvidia_drivers.run
+
+# plotting and EGL VTK
+COPY vtk-egl-9.0.1-cp38-cp38-linux_x86_64.whl vtk-egl-9.0.1-cp38-cp38-linux_x86_64.whl
+RUN pip install vtk-egl-9.0.1-cp38-cp38-linux_x86_64.whl \
+    && rm vtk-egl-9.0.1-cp38-cp38-linux_x86_64.whl \
+    && pip install pyvista==0.27.2 ipyvtk-simple==0.1.3
+
+# make jovyan sudo
+RUN usermod -aG sudo jovyan
+RUN echo '%sudo ALL=(ALL) NOPASSWD:ALL' >> /etc/sudoers
+USER jovyan

IMAGE_NAME

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+#!/bin/bash
+
+# contains base image name version
+VERSION=v0.5.3
+IMAGE=mapdlhelm.azurecr.io/jupyterlab_base:$VERSION

build_image.sh

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+#!/bin/bash
+
+set -e
+
+# build the ansys-base image single user image and pushes it to azure
+source IMAGE_NAME
+docker build -t $IMAGE .
+docker push $IMAGE

environment.yml

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+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - jupyterlab=2.2.9
+  - itkwidgets=0.32.0
+  - ipywidgets=7.5.1
+  - pandas=1.1.4
+

labextensions.txt

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+@jupyter-widgets/[email protected]
+[email protected]
+[email protected]
+[email protected]
+[email protected]
+[email protected]

run_image.sh

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+source IMAGE_NAME
+docker run -it --rm -v /home/alex/python:/mnt/python -v /tmp:/mnt/tmp -p 8888:8888 --gpus all $IMAGE