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NAMESPACE
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151 lines (150 loc) · 3.68 KB
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# Generated by roxygen2: do not edit by hand
export("flag<-")
export("group_col<-")
export("subject_col<-")
export("time_col<-")
export(align_batches)
export(assess_quality)
export(assign_cluster_id)
export(citations)
export(clean_stats_results)
export(cluster_features)
export(cohens_d)
export(combined_data)
export(compress_clusters)
export(construct_metabosets)
export(correct_drift)
export(dc_cubic_spline)
export(dobc)
export(drop_flagged)
export(drop_qcs)
export(exponential)
export(find_clusters)
export(find_connections)
export(finish_log)
export(finite_mad)
export(finite_max)
export(finite_mean)
export(finite_median)
export(finite_min)
export(finite_quantile)
export(finite_sd)
export(fit_rf)
export(fix_MSMS)
export(flag)
export(flag_contaminants)
export(flag_detection)
export(flag_quality)
export(flag_report)
export(fold_change)
export(group_col)
export(importance_rf)
export(impute_rf)
export(impute_simple)
export(init_log)
export(inspect_dc)
export(install_dependencies)
export(inverse_normalize)
export(join_fData)
export(join_pData)
export(log_text)
export(manhattan_plot)
export(mark_nas)
export(mark_qcs)
export(merge_batches)
export(merge_exprs)
export(merge_metabosets)
export(mixomics_pls)
export(mixomics_pls_optimize)
export(mixomics_plsda)
export(mixomics_plsda_optimize)
export(mixomics_spls_optimize)
export(mixomics_splsda_optimize)
export(muvr_analysis)
export(mz_rt_plot)
export(normalize_batches)
export(pca_bhattacharyya_dist)
export(perform_auc)
export(perform_correlation_tests)
export(perform_homoscedasticity_tests)
export(perform_kruskal_wallis)
export(perform_lm)
export(perform_lm_anova)
export(perform_lmer)
export(perform_logistic)
export(perform_mann_whitney)
export(perform_oneway_anova)
export(perform_paired_t_test)
export(perform_pairwise_non_parametric)
export(perform_pairwise_t_test)
export(perform_permanova)
export(perform_repeatability)
export(perform_t_test)
export(perform_wilcoxon_signed_rank)
export(plot_dendrogram)
export(plot_dist_density)
export(plot_effect_heatmap)
export(plot_injection_lm)
export(plot_p_histogram)
export(plot_pca)
export(plot_pca_arrows)
export(plot_pca_hexbin)
export(plot_pca_loadings)
export(plot_quality)
export(plot_sample_boxplots)
export(plot_sample_heatmap)
export(plot_sample_suprahex)
export(plot_tsne)
export(plot_tsne_arrows)
export(plot_tsne_hexbin)
export(pqn_normalization)
export(prop_found)
export(prop_na)
export(pull_clusters)
export(quality)
export(read_from_excel)
export(ruvs_qc)
export(save_batch_plots)
export(save_beeswarm_plots)
export(save_dc_plots)
export(save_group_boxplots)
export(save_group_lineplots)
export(save_plot)
export(save_scatter_plots)
export(save_subject_line_plots)
export(subject_col)
export(summary_statistics)
export(time_col)
export(visualizations)
export(visualize_clusters)
export(volcano_plot)
export(write_to_excel)
exportMethods("flag<-")
exportMethods("group_col<-")
exportMethods("subject_col<-")
exportMethods("time_col<-")
exportMethods(combined_data)
exportMethods(exponential)
exportMethods(flag)
exportMethods(group_col)
exportMethods(join_fData)
exportMethods(join_pData)
exportMethods(log)
exportMethods(log10)
exportMethods(log2)
exportMethods(manhattan_plot)
exportMethods(mz_rt_plot)
exportMethods(scale)
exportMethods(subject_col)
exportMethods(time_col)
exportMethods(volcano_plot)
import(methods)
importClassesFrom(Biobase,ExpressionSet)
importFrom(Biobase,"exprs<-")
importFrom(Biobase,"pData<-")
importFrom(Biobase,exprs)
importFrom(Biobase,pData)
importFrom(foreach,"%do%")
importFrom(foreach,"%dopar%")
importFrom(grDevices,rgb)
importFrom(magrittr,"%>%")