VERSION 0.6.0

Author: blankjul

.gitattributes

@@ -1,3 +1,3 @@
 * linguist-detectable=false
 *.py linguist-detectable=true
-
+*.ipynb filter=remove-notebook-output

MANIFEST.in

@@ -1,4 +1,4 @@
 prune .
 recursive-include pymoo *.py *.pyx
-recursive-include pymoo/cython/vendor *.c *.h
+recursive-include pymoo/cython/vendor *.cpp *.h
 include LICENSE Makefile

docs/run.py

@@ -9,6 +9,8 @@
 
 IPYNBS = [e for e in files_from_folder(DOCS, regex='**/*.ipynb', skip=SKIP) if ".ipynb_checkpoints" not in e]
 
+IPYNBS = ['/Users/blankjul/workspace/pymoo/docs/source/algorithms/usage.ipynb',
+          '/Users/blankjul/workspace/pymoo/docs/source/algorithms/moo/nsga2.ipynb']
 
 failed = []
 

docs/source/_theme/layout.html

@@ -113,7 +113,7 @@
         </div>
 
 
-        <div id="main-content" class="col py-3 px-6 px-md-4">
+        <div id="main-content" class="col py-3 px-6 col-md-9 px-md-4">
 
             <div>
                 {{ super() }}

docs/source/_theme/theme.conf

@@ -1,7 +1,7 @@
 [theme]
 inherit = pydata_sphinx_theme
 pygments_style = tango
-sidebars = search-field.html, sbt-sidebar-nav.html, sbt-sidebar-footer.html
+sidebars = sidebar-search-bs.html, sbt-sidebar-nav.html, sbt-sidebar-footer.html
 stylesheet = sphinx-book-theme.da26317cf37e5c4af2fa3e6253912353.css
 
 [options]

docs/source/algorithms/hyperparameters.ipynb

@@ -54,10 +54,10 @@
    "execution_count": null,
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2022-07-29T18:21:25.160243Z",
-     "iopub.status.busy": "2022-07-29T18:21:25.159678Z",
-     "iopub.status.idle": "2022-07-29T18:21:25.282419Z",
-     "shell.execute_reply": "2022-07-29T18:21:25.281202Z"
+     "iopub.execute_input": "2022-07-30T17:25:21.043948Z",
+     "iopub.status.busy": "2022-07-30T17:25:21.043537Z",
+     "iopub.status.idle": "2022-07-30T17:25:21.098306Z",
+     "shell.execute_reply": "2022-07-30T17:25:21.097755Z"
     },
     "pycharm": {
      "name": "#%%\n"
@@ -100,10 +100,10 @@
    "execution_count": null,
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2022-07-29T18:21:25.288658Z",
-     "iopub.status.busy": "2022-07-29T18:21:25.288217Z",
-     "iopub.status.idle": "2022-07-29T18:21:37.210503Z",
-     "shell.execute_reply": "2022-07-29T18:21:37.209863Z"
+     "iopub.execute_input": "2022-07-30T17:25:21.101947Z",
+     "iopub.status.busy": "2022-07-30T17:25:21.101648Z",
+     "iopub.status.idle": "2022-07-30T17:25:31.692131Z",
+     "shell.execute_reply": "2022-07-30T17:25:31.690739Z"
     },
     "pycharm": {
      "name": "#%%\n"
@@ -155,10 +155,10 @@
    "execution_count": null,
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2022-07-29T18:21:37.213740Z",
-     "iopub.status.busy": "2022-07-29T18:21:37.213398Z",
-     "iopub.status.idle": "2022-07-29T18:21:44.233047Z",
-     "shell.execute_reply": "2022-07-29T18:21:44.232092Z"
+     "iopub.execute_input": "2022-07-30T17:25:31.696459Z",
+     "iopub.status.busy": "2022-07-30T17:25:31.696067Z",
+     "iopub.status.idle": "2022-07-30T17:25:38.499709Z",
+     "shell.execute_reply": "2022-07-30T17:25:38.498892Z"
     },
     "pycharm": {
      "name": "#%%\n"
@@ -212,10 +212,10 @@
    "execution_count": null,
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2022-07-29T18:21:44.237637Z",
-     "iopub.status.busy": "2022-07-29T18:21:44.237353Z",
-     "iopub.status.idle": "2022-07-29T18:22:00.709442Z",
-     "shell.execute_reply": "2022-07-29T18:22:00.708080Z"
+     "iopub.execute_input": "2022-07-30T17:25:38.503181Z",
+     "iopub.status.busy": "2022-07-30T17:25:38.502820Z",
+     "iopub.status.idle": "2022-07-30T17:25:53.295688Z",
+     "shell.execute_reply": "2022-07-30T17:25:53.294554Z"
     },
     "pycharm": {
      "name": "#%%\n"
@@ -269,10 +269,10 @@
    "execution_count": null,
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2022-07-29T18:22:00.714327Z",
-     "iopub.status.busy": "2022-07-29T18:22:00.713885Z",
-     "iopub.status.idle": "2022-07-29T18:22:17.733850Z",
-     "shell.execute_reply": "2022-07-29T18:22:17.733006Z"
+     "iopub.execute_input": "2022-07-30T17:25:53.299099Z",
+     "iopub.status.busy": "2022-07-30T17:25:53.298836Z",
+     "iopub.status.idle": "2022-07-30T17:26:08.644353Z",
+     "shell.execute_reply": "2022-07-30T17:26:08.643595Z"
     },
     "pycharm": {
      "name": "#%%\n"

docs/source/algorithms/index.ipynb

@@ -79,7 +79,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3 (ipykernel)",
+   "display_name": "Python 3",
    "language": "python",
    "name": "python3"
   },
@@ -93,7 +93,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.5"
+   "version": "3.8.8"
   },
   "pycharm": {
    "stem_cell": {

docs/source/algorithms/initialization.ipynb

@@ -3,6 +3,9 @@
   {
    "cell_type": "raw",
    "metadata": {
+    "pycharm": {
+     "name": "#%% raw\n"
+    },
     "raw_mimetype": "text/restructuredtext"
    },
    "source": [
@@ -11,21 +14,33 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "pycharm": {
+     "name": "#%% md\n"
+    }
+   },
    "source": [
     "# Initialization"
    ]
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "pycharm": {
+     "name": "#%% md\n"
+    }
+   },
    "source": [
     "Algorithms are directly initialized using the corresponding constructor."
    ]
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "pycharm": {
+     "name": "#%% md\n"
+    }
+   },
    "source": [
     "Directly initializing the object keeps the code clean and if you use an idea lets you quickly jump to the definition of the algorithm and find hyperparameters to modify."
    ]
@@ -35,10 +50,13 @@
    "execution_count": null,
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2022-07-29T18:22:22.674957Z",
-     "iopub.status.busy": "2022-07-29T18:22:22.674481Z",
-     "iopub.status.idle": "2022-07-29T18:22:22.797082Z",
-     "shell.execute_reply": "2022-07-29T18:22:22.796277Z"
+     "iopub.execute_input": "2022-07-30T17:26:12.216644Z",
+     "iopub.status.busy": "2022-07-30T17:26:12.216187Z",
+     "iopub.status.idle": "2022-07-30T17:26:12.260811Z",
+     "shell.execute_reply": "2022-07-30T17:26:12.259942Z"
+    },
+    "pycharm": {
+     "name": "#%%\n"
     },
     "tags": []
    },

docs/source/algorithms/moo/age.ipynb

@@ -60,10 +60,10 @@
    "metadata": {
     "code": "algorithms/usage_nsga2.py",
     "execution": {
-     "iopub.execute_input": "2022-07-29T18:22:38.664077Z",
-     "iopub.status.busy": "2022-07-29T18:22:38.663698Z",
-     "iopub.status.idle": "2022-07-29T18:22:49.127622Z",
-     "shell.execute_reply": "2022-07-29T18:22:49.125936Z"
+     "iopub.execute_input": "2022-07-30T17:26:25.496226Z",
+     "iopub.status.busy": "2022-07-30T17:26:25.495827Z",
+     "iopub.status.idle": "2022-07-30T17:26:34.312654Z",
+     "shell.execute_reply": "2022-07-30T17:26:34.311991Z"
     },
     "tags": []
    },
@@ -104,10 +104,10 @@
    "metadata": {
     "code": "algorithms/usage_nsga2_binary.py",
     "execution": {
-     "iopub.execute_input": "2022-07-29T18:22:49.136048Z",
-     "iopub.status.busy": "2022-07-29T18:22:49.135354Z",
-     "iopub.status.idle": "2022-07-29T18:23:07.679326Z",
-     "shell.execute_reply": "2022-07-29T18:23:07.678625Z"
+     "iopub.execute_input": "2022-07-30T17:26:34.316070Z",
+     "iopub.status.busy": "2022-07-30T17:26:34.315790Z",
+     "iopub.status.idle": "2022-07-30T17:26:47.885787Z",
+     "shell.execute_reply": "2022-07-30T17:26:47.884792Z"
     },
     "tags": []
    },

docs/source/algorithms/moo/age2.ipynb

@@ -37,10 +37,10 @@
    "metadata": {
     "code": "algorithms/usage_nsga2.py",
     "execution": {
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-     "iopub.status.busy": "2022-07-29T18:24:43.207916Z",
-     "iopub.status.idle": "2022-07-29T18:25:00.557359Z",
-     "shell.execute_reply": "2022-07-29T18:25:00.555969Z"
+     "iopub.execute_input": "2022-07-30T17:27:56.968774Z",
+     "iopub.status.busy": "2022-07-30T17:27:56.968284Z",
+     "iopub.status.idle": "2022-07-30T17:28:07.508948Z",
+     "shell.execute_reply": "2022-07-30T17:28:07.508223Z"
     },
     "tags": []
    },