jellyfish_htc.xml missing sbol3.CombinatorialDerivation object(s)

[tramyn]

I was given a xml file that describes an experimental protocol for jellyfish_htc.
In this file, there is an sbol3.Component object with a displayId = htc_design and four sbol3.VariableFeature objects describing design variants for the protocol. These 4 sbol3.VariableFeatures and the sbol3.Component must be added to an sbol3.CombinatorialDerivation object to describe a valid protocol. The sbol3.Component object must be added to the sbol3.CombinatorialDerivation object as a template and the 4 sbol3.VariableFeatures must be added as sbol3.VariableFeatures. Note that each sbol3.CombinatorialDerivation object corresponds to a measurement. If the protocol wants to specify two form of measurements, then 2 sbol3.CombinatorialDerivation objects must be created.

I have tried locating sbol3.CombinatorialDerivation object in the file but do not see one. Currently, this missing object prevents Intent Parser from generating this experimental protocol onto a Google Document.

[tramyn]

I can also see that there is an pysbol3 object with name = The HTC culture condition design. It has a similar structure to that of a CombinatorialDerivation object but is missing a type QName to indicate it is a CombinatorialDerivation object. Does this issue tie to opil's SD2E/opil#148 issue?

[bjkeller]

@tramyn I believe so.

The htc_design Component corresponds to the template of the CombinatorialDerivation (displayID is culture_conditions)