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missing test files
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‎test/bamtofastq/test2.sam‎

Lines changed: 29 additions & 0 deletions
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@HD VN:1.0 GO:none SO:coordinate
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@SQ SN:chr1 LN:249250621
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paired-1 65 chr1 1 60 30M * 0 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA DDDDDDDDDDDDDDDDDDDDDDDDDDDDDD MD:Z:50
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paired-1 129 chr1 1 60 30M * 0 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGG EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE MD:Z:50
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unpaired-1 100 chr1 1 60 30M * 0 0 GAAGGCCACCGCCGCGGTTATTTTCCTTCA CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI MD:Z:50
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paired-2 129 chr1 1 60 30M * 0 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT FFFFFFFFFFFFFFFFFFFFFFFFFFFFFF MD:Z:50
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paired-2 65 chr1 1 60 30M * 0 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MD:Z:50
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unpaired-2 100 chr1 1 60 30M * 0 0 GAAGGCCACCGCCGCGGTTATTTTCCTTCA CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI MD:Z:50
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unpaired-3 100 chr1 1 60 30M * 0 0 GAAGGCCACCGCCGCGGTTATTTTCCTTCA CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI MD:Z:50
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unpaired-4 100 chr1 1 60 30M * 0 0 GAAGGCCACCGCCGCGGTTATTTTCCTTCA CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI MD:Z:50
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unpaired-5 100 chr1 1 60 30M * 0 0 GAAGGCCACCGCCGCGGTTATTTTCCTTCA CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI MD:Z:50
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unpaired-6 100 chr1 1 60 30M * 0 0 GAAGGCCACCGCCGCGGTTATTTTCCTTCA CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI MD:Z:50
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paired-3 129 chr1 1 60 30M * 0 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT FFFFFFFFFFFFFFFFFFFFFFFFFFFFFF MD:Z:50
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paired-3 65 chr1 2 60 30M * 0 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MD:Z:50
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paired-3 65 chr1 3 60 30M * 0 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MD:Z:50
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paired-3 65 chr1 4 60 30M * 0 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MD:Z:50
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paired-3 65 chr1 5 60 30M * 0 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MD:Z:50
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paired-3 65 chr1 6 60 30M * 0 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MD:Z:50
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unpaired-7 100 chr1 1 60 30M * 0 0 GAAGGCCACCGCCGCGGTTATTTTCCTTCA CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI MD:Z:50
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unpaired-8 100 chr1 1 60 30M * 0 0 GAAGGCCACCGCCGCGGTTATTTTCCTTCA CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI MD:Z:50
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unpaired-9 100 chr1 1 60 30M * 0 0 GAAGGCCACCGCCGCGGTTATTTTCCTTCA CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI MD:Z:50
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paired-4 65 chr1 1 60 30M * 0 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT FFFFFFFFFFFFFFFFFFFFFFFFFFFFFF MD:Z:50
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paired-4 129 chr1 2 60 30M * 0 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MD:Z:50
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paired-4 129 chr1 3 60 30M * 0 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MD:Z:50
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paired-4 129 chr1 4 60 30M * 0 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MD:Z:50
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paired-4 129 chr1 5 60 30M * 0 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MD:Z:50
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unpaired-10 100 chr1 1 60 30M * 0 0 GAAGGCCACCGCCGCGGTTATTTTCCTTCA CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI MD:Z:50
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paired-5 129 chr1 1 60 30M * 0 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT FFFFFFFFFFFFFFFFFFFFFFFFFFFFFF MD:Z:50
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paired-5 65 chr1 1 60 30M * 0 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MD:Z:50

‎test/complement/issue_503.bed‎

Lines changed: 4 additions & 0 deletions
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chr1 1 100 feature1 0 +
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chr1 100 200 feature2 0 +
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chr1 150 500 feature3 0 -
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chr1 900 950 feature4 0 -

‎test/complement/issue_503.genome‎

Lines changed: 3 additions & 0 deletions
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chr1 1000
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chr2 1000
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chr3 1000

‎test/intersect/exons.issue750.bed‎

Lines changed: 3 additions & 0 deletions
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chr1 0 100 exon1 1 +
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chr1 200 300 exon2 2 -
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‎test/intersect/split.issue750.bam‎

296 Bytes
Binary file not shown.

‎test/intersect/split.issue750.sam‎

Lines changed: 5 additions & 0 deletions
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@HD VN:1.0 GO:none SO:coordinate
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@SQ SN:chr1 LN:249250621
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one_block_one_exon_30bp 16 chr1 1 40 30M * 0 0 GAAGGCCACCGCCGCGGTTATTTTCCTTCA CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI MD:Z:50
4+
one_block_one_exon_20bp 16 chr1 81 40 30M * 0 0 GAAGGCCACCGCCGCGGTTATTTTCCTTCA CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI MD:Z:50
5+
two_blocks_two_exons 16 chr1 91 40 10M100N20M * 0 0 GAAGGCCACCGCCGCGGTTATTTTCCTTCA CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI MD:Z:50

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