Merge pull request #921 from dwinter/master

arq5x · web-flow · commit edcc3ebb5134 · 2021-06-14T18:08:59.000-06:00
Tiny tweak to error message when bamToFastq doesn't get a bam file
diff --git a/src/bamToFastq/bamToFastqMain.cpp b/src/bamToFastq/bamToFastqMain.cpp
@@ -98,7 +98,7 @@ int bamtofastq_main(int argc, char* argv[]) {
 
     // make sure we have a BAM file
     if (!haveInBam) {
-      cerr << endl << "*****" << endl << "*****ERROR: Need -bam. " << endl << "*****" << endl;
+      cerr << endl << "*****" << endl << "*****ERROR: Need bam file (-i). " << endl << "*****" << endl;
       showHelp = true;
     }
     // make sure we have an end1 FASTQ file

Original file line number	Diff line number	Diff line change
`@@ -98,7 +98,7 @@ int bamtofastq_main(int argc, char* argv[]) {`
`98`	`98`
`99`	`99`	`// make sure we have a BAM file`
`100`	`100`	`if (!haveInBam) {`
`101`		`- cerr << endl << "***" << endl << "*ERROR: Need -bam. " << endl << "***" << endl;`
	`101`	`+ cerr << endl << "***" << endl << "*ERROR: Need bam file (-i). " << endl << "***" << endl;`
`102`	`102`	`showHelp = true;`
`103`	`103`	`}`
`104`	`104`	`// make sure we have an end1 FASTQ file`