Update README.md

Author: MarioKrenn6240

README.md

@@ -12,16 +12,16 @@ NOTE: do not use `pip install pytheus` (it will install a different package)
 
 ## Running PyTheus
 
-To list the included examples, type
+To run one of the included examples, type e.g.
 
 ```
-pytheus list
+pytheus run --example ghz_346
 ```
 
-To run one of the included examples, type e.g.
+To list all examples, type
 
 ```
-pytheus run --example ghz_346
+pytheus list
 ```
 
 To run your own input file, type
@@ -33,6 +33,8 @@ pytheus run PATH_TO_YOUR_INPUT_FILE
 Output of optimization is saved to a directory called `output`. Names of the subdirectories are specified by the name
 and content of the config file.
 
+## Analysing PyTheus results
+
 To plot the graph corresponding to one result saved as a json file, execute 
 
 ```