updating readme

Author: soerenarlt

README.md

@@ -38,29 +38,6 @@ To plot the graph corresponding to one result saved as a json file, execute
 pytheus plot PATH_TO_RESULT_FILE
 ```
 
-To analyze a subdirectory corresponding to one run, type
-
-```
-pytheus analyze -d outputs/ghz_346/ghz_346 
-```
-or just 
-```
-pytheus analyze  
-```
-then an overview of all available folders that can be selected is given.
-After that one can choose which run (if there exists different run-folders having different
-summary files) one wants to analyze. When you have decided on a state, an overview plot is created
-that shows the graph, the development of the loss function and various properties 
-that can be declared via ```-i```. With ```-pm``` a pdf can be created that shows all perfect matchings. 
-When one wants to set all weights to plus minus one one can choose the option ```-one```.
-Everthing together:
-```
-pytheus analyze -d your/directory -one -pm -i 'norm' -i 'ent' -i 'k'  
-```
-```norm``` shows the normalization of the state, ```ent``` gives information about entanglement for 
-the different bipartitions and ```k``` gives information if there is a k-uniform state and which
- bipartitions are maximally entangled (=1) or separable (=0).
-
 To get help, add the `--help` option to any command. For instance
 
 ```