Bump ArviZ compat to v0.13 (#46)

* Bump Julia lower bound

* Refine Julia test versions

* Update stdlib lower bounds

* Remove outdated Julia version check

* Bump ArviZ compat

* Update elpd standard error accessors

* Add docs source to local package

* Increment patch version number

* Git ignore Manifest.toml

* Update src/conversions.jl

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

---------

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

Author: sethaxen

.github/workflows/ci.yml

@@ -14,7 +14,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        julia-version: ["1.8", "1", "pre"]
+        julia-version: ["min", "lts", "1", "pre"]
         os: [ubuntu-latest]
         include:
           - julia-version: "1"

.gitignore

@@ -6,4 +6,5 @@
 /docs/build
 /test/*.log
 .DS_Store
-.CondaPkg
+.CondaPkg
+Manifest.toml

Project.toml

@@ -1,7 +1,7 @@
 name = "ArviZPythonPlots"
 uuid = "4a6e88f0-2c8e-11ee-0601-e94153f0eada"
 authors = ["Seth Axen <[email protected]>"]
-version = "0.1.9"
+version = "0.1.10"
 
 [deps]
 ArviZ = "131c737c-5715-5e2e-ad31-c244f01c1dc7"
@@ -15,18 +15,18 @@ Reexport = "189a3867-3050-52da-a836-e630ba90ab69"
 Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
 
 [compat]
-ArviZ = "0.10, 0.11, 0.12"
+ArviZ = "0.13"
 ArviZExampleData = "0.1.5"
 CondaPkg = "0.2"
 DimensionalData = "0.23, 0.24, 0.25, 0.26, 0.27, 0.28, 0.29"
-Markdown = "1.6"
+Markdown = "1"
 OrderedCollections = "1"
 PythonCall = "0.9"
 PythonPlot = "1"
-Random = "1.6"
+Random = "1"
 Reexport = "1"
 Tables = "1"
-julia = "1.8"
+julia = "1.10"
 
 [extras]
 ArviZExampleData = "2f96bb34-afd9-46ae-bcd0-9b2d4372fe3c"

docs/Project.toml

@@ -7,6 +7,9 @@ Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d"
 
+[sources]
+ArviZPythonPlots = {path = ".."}
+
 [compat]
 ArviZExampleData = "0.1.5"
 Distributions = "0.25"

src/conversions.jl

@@ -6,9 +6,9 @@ function PythonCall.Py(d::PSISLOOResult)
     pyds = PythonCall.Py(ds)
     entries = (
         elpd_loo=estimates.elpd,
-        se=estimates.elpd_mcse,
+        se=estimates.se_elpd,
         p_loo=estimates.p,
-        n_samples=psis_result.nchains * psis_result.ndraws,
+        n_samples=(psis_result.nchains * psis_result.ndraws),
         n_data_points=psis_result.nparams,
         warning=false,
         loo_i=pyds.loo_i,
@@ -27,7 +27,7 @@ function PythonCall.Py(d::WAICResult)
     pyds = PythonCall.Py(ds)
     entries = (
         elpd_waic=estimates.elpd,
-        se=estimates.elpd_mcse,
+        se=estimates.se_elpd,
         p_waic=estimates.p,
         n_samples="unknown",
         n_data_points=length(pointwise.elpd),
@@ -47,7 +47,7 @@ end
 
 function PythonCall.Py(mc::ModelComparisonResult)
     table = Tables.columntable(mc)
-    se_pairs = (:elpd_mcse => :se, :elpd_diff_mcse => :dse)
+    se_pairs = (:se_elpd => :se, :se_elpd_diff => :dse)
     est_pairs = if eltype(mc.elpd_result) <: PSISLOOResult
         (:elpd => :elpd_loo, :p => :p_loo)
     elseif eltype(mc.elpd_result) <: WAICResult

test/test_plots.jl

@@ -108,7 +108,7 @@ using Test
         plotclose()
     end
 
-    VERSION ≥ v"1.8" && @testset "plot_kde" begin
+    @testset "plot_kde" begin
         plot_kde(arr1)
         plotclose()