askoR/DESCRIPTION at master · askomics/askoR · GitHub

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Package: askoR
Title: Differential Expression Analysis using 'edgeR'
Version: 1.0.0
Date: 2024-08-30
Authors@R: c(person(given = "Fabrice",
                      family = "Legeai",
                      role = "aut",
		      email = "fabrice.legeai@inrae.fr"),
               person(given = "Kévin",
                      family = "Gazengel",
                      role = c("aut", "cre"),
                      email = "kevin.gazengel@inrae.fr"),
               person(given = "Susete",
                      family = "Alves Carvalho",
                      role = "aut",
		      email = "susete.alves-carvalho@inrae.fr")
		)
Maintainer: Kévin Gazengel <kevin.gazengel@inrae.fr>
Description: Pipeline for the analysis of gene expression data, using 'edgeR' for differential analysis, 'topGO' for GOenrichment, and 'coseq' for gene clustering.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends:
    topGO,
    goSTAG,
    edgeR,
    limma
Imports:
    corrplot,
    cowplot,
    viridis,
    gghalves,
    tidyverse,
    ggfortify,
    ggrepel,
    gplots,
    ggplot2,
    VennDiagram,
    RColorBrewer,
    UpSetR,
    grid,
    Rgraphviz,
    stringr,
    optparse,
    Glimma,
    ComplexHeatmap,
    circlize,
    coseq,
    tidyr
Suggests:
    futile.logger,
    methods,
    graph,
    stats,
    knitr,
    rmarkdown,
    BiocStyle,
    testthat (>= 3.0.0)
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
biocViews:
    RNASeq,
    Transcriptomics,
    GeneExpression,
    DifferentialExpression,
    GeneSetEnrichment,
    Normalization,
    MultipleComparison,
    FunctionalGenomics,
    Clustering
Config/testthat/edition: 3