Clean-up unused files (#271)

* Remove unused logs module

* Remove unused config files

* Update manifest to fix changed file extension and removed file

* Additional logs module related clean up

* Removing reference to logs docs page

* Relax codecov threshold slightly to avoid spurious fails

Author: matt-graham

.gitmodules

@@ -2,10 +2,8 @@ graft s2fft
 graft tests
 graft docs
 
-include README.rst
-include pytest.ini
+include README.md
 include LICENCE.txt
-include s2fft/default-logging-config.yaml
 
 exclude .coveragerc
 exclude *.log

.style.yapf

@@ -0,0 +1,6 @@
+coverage:
+  status:
+    project:
+      default:
+        target: auto
+        threshold: 0.1%

MANIFEST.in

@@ -141,5 +141,4 @@ Utility Functions
    healpix_ffts
    utils
    rotation
-   logs
 

codecov.yml

@@ -28,8 +28,6 @@ classifiers = [
 description = "Differentiable and accelerated spherical transforms with JAX"
 dependencies = [
     "numpy>=1.20",
-    "colorlog",
-    "pyyaml",
     "jax>=0.3.13",
     "jaxlib",
     "torch",
@@ -152,9 +150,6 @@ lint.pep8-naming.classmethod-decorators = [
 [tool.setuptools]
 packages = ["s2fft"]
 
-[tool.setuptools.package-data]
-s2fft = ["default-logging-config.yaml"]
-
 [tool.setuptools_scm]
 local_scheme = "no-local-version"
 write_to = "s2fft/_version.py"

docs/api/utility/index.rst

@@ -2,7 +2,6 @@
 
 import jax
 
-from . import logs
 from .recursions.price_mcewen import (
     generate_precomputes,
     generate_precomputes_jax,