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Releases: astrorama/SourceXtractorPlusPlus

0.17 release

13 Apr 14:15
c3c9d4c

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  • Added compatibility with cfitsio syntax for selecting a hdu in detection images
  • Added support for multi-extension fits detection images, to be processed in sequence and get catalog with parts
  • Added ErrorEllipse property
  • Added model fitting without psf, use "nospsf" as filename to activate
  • Stability improvements

0.16 release

17 Dec 16:06
39a4fc0

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New features:

  • Model fitting improvements
    • Iterative deblending for model fitting
    • Custom user-made models can be provided in the form of ONNX compute graphs
    • Automatic fit resolution downgrade for very large models
    • Python priors are now evaluated in the C++ code for increased performance
    • Overall major improvements to stability, performance and memory usage

Changes that may require configuration files update:

  • Multi-thresholding and grouping of split sources are now on by default
  • In the model fitting Python configuration, source properties are now actual properties instead of getter functions: o.get_radius() => o.radius
  • Iterative model fitting is on by default, if needed the new system can be turned off with use_iterative_fitting(False) (not all improvements from this release are available in the old system)
  • Segmentation using a ML model was renamed from --segmentation-onnx-model to --segmentation-ml-model (experimental feature)
  • The Onnx property that performs a measurement using an Onnx compute graph is renamed to MLMeasurement

0.15 release

31 May 12:13
04d07e8

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Compatibility breaking change since 0.14:

FITS HDU numbering scheme in the python configuration file has been changed to start at 0 for the primary HDU instead of 1.

While 1 based indices are used internally by the cfitsio library we realized that 0 based indices are much more common. In case of manually specified HDU numbers, some Python configuration files may need to be adjusted.

New features:

  • PSF stacks
  • Association mode

Other changes:
Bug fixes and performance improvements especially on machines with lots of CPU cores
SourceXtractor++ now requires version 2.19 of the Alexandria library.

0.14 release

05 Mar 16:17
57f0b36

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This release fixes a performance regression in 0.13 as well as some missing error bars in aperture photometry

0.13 Release

08 Feb 16:26
7352c34

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Improvements:

  • Multi-threaded computation for grouping/cleaning
  • Variable PSF: Add support for other coordinates
  • New segmentation mode: BFS, uses a combination of breadth first search and tile by tile processing using a Hilbert curve to optimize memory usage

Fixes:

  • Python configuration now uses internal methods instead of astropy to load FITS files to avoid a few issues caused by the difference
  • Fixed a problem with multiple dots in checkimage filenames
  • Fixed a regression related to maximum number of simultaneous open files
  • Fixed a problem with zero values in weight images
  • Moffat checkimage parameter renamed to --debug-image-moffat to reflect its meant for internal testing use (very slow performance)
  • Unsigned int check images are now saved as signed int check images to avoid compatibility issues
  • Improved WCS error reporting

0.12 Release

05 Oct 14:39
927e1a6

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  • Added model fitting re-normalization to fix accuracy issues and inconsistent error bars
  • New option: model fitting resolution multiplier (--sampling-scale-factor)
  • Better default parameters for model fitting sampling
  • ONNX plugin, can load ONNX format neural networks and perform inference on all sources
  • Fixed build on Fedora 33
  • output format option is no longer case sensitive

0.11 release

16 Jul 15:18
069c3fe

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Bug fixes

  • Fix handling of HDU number when using MEF files (#260)
  • Add support for comment on .head files (#242 and #260)
  • Fix for wcslib 7 (#232)
  • Fix for background cells with 0 sigma (#233 and #234)
  • Fix infinities on auto_flux_err when the gain is 0 (#239)
  • Improved performance when reading the header from MEF files (#237)
  • Fix handling of cell sizes for the background model (#245, #247)
  • Use the fftw3 mode FFTW_ESTIMATE instead of FFTW_MEASURE. Solve reproducibility issues. (#256)
  • Catch errors from wcslib (#259)
  • Fix computation of uncertainties in the model fitting (#263)
  • Fix potential segfaults when running multithreaded (#265)
  • Fix the format of the units written into the catalog (#268)

New Features

  • Allow .head files to override WCS coordinates (#240)
  • Generate elongation and ellipticity columns when the property ShapeParameters is enabled (#250)
  • New plugin for Signal to Noise measurement: SNRRatio. Outputs the column snrratio (#251)
  • New plugin Vignet. Generates a multidimensional column vignet: (n.images, width, height) (#252)
  • New plugin GrowthCurve: Generates columns flux_growth and flux_growth_step. Growth curve is measured in each measurement frame (#264)
  • New plugin FluxRadius. Generates a column flux_radius. Measured in each measurement frame. (#264)
  • Added support for generating LDAC catalogs. It can be enabled with output-catalog-format=FITS_LDAC (#258)

Other

  • Update to Alexandria 2.16
  • Refactored background code (#248). If it gives trouble, it can be disabled with the flag --background-legacy
  • Can build with C++14

0.10 release

13 Mar 09:28
d60ee21

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Changes since 0.8:

  • Incompatible change: the sign convention for the model fitting angle is now reversed. It now uses the same counter-clockwise convention as ShapeParameters and SExtractor 2. This change does not impact world coordinate results.
  • Improved performance overall and especially for model-fitting
  • Added /etc to the config search path
  • prevent race condition with some versions of wcslib that could result in crashes and corrupted results in multi-threaded model-fitting
  • fixed a problem with loading compressed multi-extension FITS files

0.9 test pre-release

06 Mar 14:43
27ad265

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0.9 test pre-release Pre-release
Pre-release

(Note: odd-numbered versions are test pre-releases. The current stable version is 0.8. The next official release will be 0.10)

Changes since 0.8:

  • Incompatible change: the sign convention for the model fitting angle is now reversed. It now uses the same counter-clockwise convention as ShapeParameters and SExtractor 2. This change does not impact world coordinate results.
  • Improved performance overall and especially for model-fitting
  • Added /etc to the config search path
  • prevent race condition with some versions of wcslib that could result in crashes and corrupted results in multi-threaded model-fitting
  • fixed a problem with loading compressed multi-extension FITS files

0.8 release

30 Jan 15:44
e25b328

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Changes since 0.7:

  • Fixed isophotal variance when using gain=0 to indicate infinite gain

Changes since 0.6.1:

New features:

  • Support for .head text files to override fits file headers
  • New option --dump-default-config to produce a default configuration file
  • Added --grouping-moffat-max-distance option to constrain Moffat grouping to a maximum distance in pixels
  • Added an optional sliding window for Lutz segmentation (--segmentation-lutz-window-size), this allows measurement to start on sources that fall outside the window to save on memory and enable multithreading sooner. Off by default.
  • Support for the GSL minimization engine as an alternative to levmar. Levmar is still the default and recommended.
  • New signal to noise ratio check image (--check-image-snr)
  • New core threshold cleaning method (--partition-corethreshold)

Bug fixes and minor changes:

  • Fixed crash when Moffat model fitting starts with a negative value as flux guess
  • Added grouping options into the help display
  • Removed "sextractor" name from the code
  • Fixed a crash when exiting if using external plugins
  • Improved the robustness of multi-extension FITS loading
  • Improved performance of Moffat model evaluation
  • Will look for plugins in default directories too
  • Fixed pixels with negative variance values sometimes appearing
  • Compressed FITS files are now loaded correctly
  • Improved error reporting from Python
  • Outputs more and better background modelling statistics
  • Fixed compilation issues on OSX
  • Better multithreading performance if levmar was compiled with the proper options to be fully reentrant
  • Made the code compatible with the Intel compiler
  • Fixed default configuration file not found warnings
  • Source ids now start at 1 instead of 0 (source 0 was previously not distinguishable from the background on the check images)
  • The output catalog is now written incrementally instead of all at once (controllable with --output-flush-size)