opifex/.pre-commit-config.yaml at main · avitai/opifex · GitHub

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# Opifex Pre-commit Configuration
# Enhanced with workshop insights for comprehensive code quality
# Optimized for performance and reduced package installations

repos:
  # Workshop-inspired TOML formatting
  - repo: local
    hooks:
      - id: sort_pyproject
        name: sort_pyproject
        entry: toml-sort
        language: python
        args: [-i, --sort-table-keys, --sort-inline-tables, pyproject.toml]
        files: ^pyproject\.toml$
        additional_dependencies: ["toml-sort==0.23.1"]

  # Standard pre-commit hooks with scientific computing adaptations
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v5.0.0
    hooks:
      - id: trailing-whitespace
        exclude: ^(memory-bank|documents|custom_modes|.cursor)/
      - id: end-of-file-fixer
        exclude: ^(memory-bank|documents|custom_modes|.cursor)/
      - id: check-yaml
        exclude: ^(memory-bank|documents|custom_modes|.cursor)/(.*)|mkdocs\.yml$
      - id: check-added-large-files
        args: ["--maxkb=2000"] # Increased for scientific data files
        exclude: ^(memory-bank|documents|custom_modes|.cursor)/
      - id: check-merge-conflict
      - id: check-toml
      - id: check-json
        exclude: ^(memory-bank|documents|custom_modes|.cursor)/
      - id: debug-statements
        exclude: ^(memory-bank|documents|custom_modes|.cursor)/
      - id: mixed-line-ending
        exclude: ^(memory-bank|documents|custom_modes|.cursor)/

  # Workshop-inspired comprehensive Python linting and formatting
  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: v0.11.13
    hooks:
      - id: ruff # linter with scientific computing optimizations (auto-fix)
        args: [--fix]
        exclude: ^(memory-bank|documents|custom_modes|.cursor)/
        types_or: [python, pyi, jupyter, toml]
      - id: ruff-format # formatter
        types_or: [python, pyi, jupyter, toml]
        exclude: ^(memory-bank|documents|custom_modes|.cursor)/

  # GitHub Actions simulation - exact mirror of CI checks
  - repo: local
    hooks:
      - id: ruff-github-actions-check
        name: ruff-github-actions-check (mirrors CI)
        entry: uv run ruff check --output-format=github
        language: system
        types: [python]
        exclude: ^(memory-bank|documents|custom_modes|.cursor)/
        pass_filenames: false
        always_run: true
      - id: ruff-critical-check
        name: ruff-critical-check (fast CI-critical rules only)
        entry: uv run ruff check --select=RUF005,B904,F821,F822,F823 --output-format=github
        language: system
        types: [python]
        exclude: ^(memory-bank|documents|custom_modes|.cursor)/
        pass_filenames: false
        always_run: true
      - id: check-file-length
        name: check-file-length (warn >1500, fail >2000 lines)
        entry: bash
        args:
          - -c
          - |
            for file in "$@"; do
              lines=$(wc -l < "$file" 2>/dev/null || echo 0)
              if [ "$lines" -gt 2000 ]; then
                echo "ERROR: $file has $lines lines (limit: 2000)"
                exit 1
              elif [ "$lines" -gt 1500 ]; then
                echo "WARNING: $file has $lines lines (approaching limit of 2000)"
              fi
            done
          - --
        language: system
        types: [python]
        exclude: ^(memory-bank|documents|custom_modes|.cursor|tests/|examples/)

  # Type checking using project venv (ensures all deps including datarax are available)
  - repo: local
    hooks:
      - id: pyright
        name: pyright
        entry: uv run pyright --warnings
        language: system
        types: [python]
        pass_filenames: false
        exclude: ^(memory-bank|documents|custom_modes|.cursor)/

  # Workshop-inspired security scanning
  - repo: https://github.com/PyCQA/bandit
    rev: 1.8.3
    hooks:
      - id: bandit
        args: ["-c", "pyproject.toml"]
        exclude: ^(memory-bank|documents|custom_modes|.cursor|tests/)/
        additional_dependencies: ["bandit[toml]"]

  # Workshop-inspired documentation quality
  - repo: https://github.com/pycqa/pydocstyle
    rev: 6.3.0
    hooks:
      - id: pydocstyle
        exclude: ^(memory-bank|documents|custom_modes|.cursor|tests/)/
        additional_dependencies: ["pydocstyle[toml]"]
        args: ["--config=pyproject.toml"]

  # Workshop-inspired notebook quality
  - repo: https://github.com/nbQA-dev/nbQA
    rev: 1.9.1
    hooks:
      - id: nbqa-ruff
        exclude: ^(memory-bank|documents|custom_modes|.cursor)/
        args: [--fix]

  # Workshop-inspired shell script quality
  - repo: https://github.com/shellcheck-py/shellcheck-py
    rev: v0.10.0.1
    hooks:
      - id: shellcheck
        exclude: ^(memory-bank|documents|custom_modes|.cursor)/
        args: ["-e", "SC1091"] # Allow sourcing files not found by shellcheck

  # Workshop-inspired Dockerfile quality (if we add Docker later)
  # Temporarily disabled due to installation issues
  # - repo: https://github.com/hadolint/hadolint
  #   rev: v2.13.1-beta
  #   hooks:
  #     - id: hadolint-docker
  #       exclude: ^(memory-bank|documents|custom_modes|.cursor)/

# CI Configuration - no autofix, manual testing before commits
ci:
  autofix_commit_msg: |
    [pre-commit.ci] auto fixes from pre-commit.com hooks

    for more information, see https://pre-commit.ci
  autofix_prs: false           # No automatic commits - run tests manually first
  autoupdate_branch: ""
  autoupdate_commit_msg: "[pre-commit.ci] pre-commit autoupdate"
  autoupdate_schedule: weekly  # Keep hooks up to date
  skip: []
  submodules: false