README.md

Tree-sequence phyloseminar

Wilder Wohns wilder.wohns@merton.ox.ac.uk

8^th April 2020

This jupyter note book accompanies the phyloseminar. Run the notebook locally on linux with the following commands:

git clone git@github.com:awohns/tree-sequence-phyloseminar.git
cd tree-sequence-phyloseminar
python3 -m venv env
source env/bin/activate
pip install wheel  #We do these before the rest as their setups need them
pip install numpy 
pip install -r requirements.txt
jupyter notebook phyloseminar.ipynb