Update dependencies and Otel to v1.32.6 (#965)

*Description of changes:*

Patch commit for Java v1.32.6 Release MCM.

Generated License Report:
```
------------------------------------------------------------
:dependencyManagement Project Dependency Updates (report to plain text file)
------------------------------------------------------------

The following dependencies are using the latest release version:
 - com.sparkjava:spark-core:2.9.4
 - com.squareup.okhttp3:okhttp:4.12.0

The following dependencies have later release versions:
 - com.amazonaws:aws-java-sdk-bom [1.12.599 -> 1.12.779]
     https://aws.amazon.com/sdkforjava
 - com.fasterxml.jackson:jackson-bom [2.16.0 -> 2.18.2]
     https://github.com/FasterXML/jackson-bom
 - com.github.ben-manes.versions:com.github.ben-manes.versions.gradle.plugin [0.50.0 -> 0.51.0]
 - com.google.guava:guava-bom [33.0.0-jre -> 33.3.1-jre]
     https://github.com/google/guava
 - com.google.protobuf:protobuf-bom [3.25.1 -> 4.29.1]
     https://developers.google.com/protocol-buffers/
 - com.linecorp.armeria:armeria-bom [1.26.4 -> 1.31.2]
     https://armeria.dev/
 - commons-logging:commons-logging [1.2 -> 1.3.4]
     https://commons.apache.org/proper/commons-logging/
 - io.grpc:grpc-bom [1.59.1 -> 1.68.2]
     https://github.com/grpc/grpc-java
 - io.opentelemetry.contrib:opentelemetry-aws-resources [1.32.0-alpha -> 1.41.0-alpha]
     https://github.com/open-telemetry/opentelemetry-java-contrib
 - io.opentelemetry.contrib:opentelemetry-aws-xray [1.32.0 -> 1.41.0]
     https://github.com/open-telemetry/opentelemetry-java-contrib
 - io.opentelemetry.instrumentation:opentelemetry-instrumentation-bom-alpha [1.32.1-adot3-alpha -> 2.10.0-alpha]
     https://github.com/open-telemetry/opentelemetry-java-instrumentation
 - io.opentelemetry.javaagent:opentelemetry-javaagent [1.32.1-adot3 -> 2.10.0]
     https://github.com/open-telemetry/opentelemetry-java-instrumentation
 - io.opentelemetry.proto:opentelemetry-proto [1.0.0-alpha -> 1.4.0-alpha]
     https://github.com/open-telemetry/opentelemetry-proto-java
 - net.bytebuddy:byte-buddy [1.14.10 -> 1.15.10]
     https://bytebuddy.net
 - org.apache.logging.log4j:log4j-bom [2.21.1 -> 2.24.2]
     https://logging.apache.org/log4j/2.x/
 - org.assertj:assertj-core [3.24.2 -> 3.26.3]
     https://assertj.github.io/doc/#assertj-core
 - org.curioswitch.curiostack:protobuf-jackson [2.2.0 -> 2.6.0]
     https://github.com/curioswitch/protobuf-jackson
 - org.junit:junit-bom [5.10.1 -> 5.11.3]
     https://junit.org/junit5/
 - org.slf4j:slf4j-api [1.7.36 -> 2.0.16]
     http://www.slf4j.org
 - org.slf4j:slf4j-simple [1.7.36 -> 2.0.16]
     http://www.slf4j.org
 - org.springframework.boot:spring-boot-dependencies [2.7.17 -> 3.4.0]
     https://spring.io/projects/spring-boot
 - org.testcontainers:testcontainers-bom [1.19.3 -> 1.20.4]
     https://java.testcontainers.org
 - software.amazon.awssdk:bom [2.21.33 -> 2.29.29]
     https://aws.amazon.com/sdkforjava

Gradle release-candidate updates:
 - Gradle: [8.8 -> 8.11.1]
```


By submitting this pull request, I confirm that my contribution is made
under the terms of the Apache 2.0 license.

Author: yiyuan-he

.github/patches/opentelemetry-java-instrumentation.patch

@@ -2057,15 +2057,99 @@ index 53390c8d85..692cd005eb 100644
    }
 
    def "send #operation async request with builder #builder.class.getName() mocked response"() {
+diff --git a/instrumentation/jmx-metrics/javaagent/src/main/java/io/opentelemetry/instrumentation/javaagent/jmx/JmxMetricInsightInstaller.java b/instrumentation/jmx-metrics/javaagent/src/main/java/io/opentelemetry/instrumentation/javaagent/jmx/JmxMetricInsightInstaller.java
+index 69b3c09c90..74a6f75ffb 100644
+--- a/instrumentation/jmx-metrics/javaagent/src/main/java/io/opentelemetry/instrumentation/javaagent/jmx/JmxMetricInsightInstaller.java
++++ b/instrumentation/jmx-metrics/javaagent/src/main/java/io/opentelemetry/instrumentation/javaagent/jmx/JmxMetricInsightInstaller.java
+@@ -20,6 +20,7 @@ import io.opentelemetry.sdk.autoconfigure.spi.ConfigProperties;
+ import java.io.InputStream;
+ import java.nio.file.Files;
+ import java.nio.file.Paths;
++import java.time.Duration;
+ import java.util.List;
+ 
+ /** An {@link AgentListener} that enables JMX metrics during agent startup. */
+@@ -32,22 +33,22 @@ public class JmxMetricInsightInstaller implements AgentListener {
+ 
+     if (config.getBoolean("otel.jmx.enabled", true)) {
+       JmxMetricInsight service =
+-          JmxMetricInsight.createService(GlobalOpenTelemetry.get(), beanDiscoveryDelay(config));
++          JmxMetricInsight.createService(
++              GlobalOpenTelemetry.get(), beanDiscoveryDelay(config).toMillis());
+       MetricConfiguration conf = buildMetricConfiguration(config);
+       service.start(conf);
+     }
+   }
+ 
+-  private static long beanDiscoveryDelay(ConfigProperties configProperties) {
+-    Long discoveryDelay = configProperties.getLong("otel.jmx.discovery.delay");
++  private static Duration beanDiscoveryDelay(ConfigProperties configProperties) {
++    Duration discoveryDelay = configProperties.getDuration("otel.jmx.discovery.delay");
+     if (discoveryDelay != null) {
+       return discoveryDelay;
+     }
+ 
+     // If discovery delay has not been configured, have a peek at the metric export interval.
+     // It makes sense for both of these values to be similar.
+-    long exportInterval = configProperties.getLong("otel.metric.export.interval", 60000);
+-    return exportInterval;
++    return configProperties.getDuration("otel.metric.export.interval", Duration.ofMinutes(1));
+   }
+ 
+   private static String resourceFor(String platform) {
+diff --git a/instrumentation/jmx-metrics/library/src/main/java/io/opentelemetry/instrumentation/jmx/engine/BeanFinder.java b/instrumentation/jmx-metrics/library/src/main/java/io/opentelemetry/instrumentation/jmx/engine/BeanFinder.java
+index 8b0fd636be..b9856f1dc9 100644
+--- a/instrumentation/jmx-metrics/library/src/main/java/io/opentelemetry/instrumentation/jmx/engine/BeanFinder.java
++++ b/instrumentation/jmx-metrics/library/src/main/java/io/opentelemetry/instrumentation/jmx/engine/BeanFinder.java
+@@ -25,7 +25,13 @@ class BeanFinder {
+ 
+   private final MetricRegistrar registrar;
+   private MetricConfiguration conf;
+-  private final ScheduledExecutorService exec = Executors.newSingleThreadScheduledExecutor();
++  private final ScheduledExecutorService exec =
++      Executors.newSingleThreadScheduledExecutor(
++          runnable -> {
++            Thread result = new Thread(runnable, "jmx_bean_finder");
++            result.setDaemon(true);
++            return result;
++          });
+   private final long discoveryDelay;
+   private final long maxDelay;
+   private long delay = 1000; // number of milliseconds until first attempt to discover MBeans
+@@ -39,12 +45,18 @@ class BeanFinder {
+   void discoverBeans(MetricConfiguration conf) {
+     this.conf = conf;
+ 
+-    if (!conf.isEmpty()) {
+-      // Issue 9336: Corner case: PlatformMBeanServer will remain unitialized until a direct
+-      // reference to it is made. This call makes sure that the PlatformMBeanServer will be in
+-      // the set of MBeanServers reported by MBeanServerFactory.
+-      ManagementFactory.getPlatformMBeanServer();
+-    }
++    exec.schedule(
++        () -> {
++          // Issue 9336: Corner case: PlatformMBeanServer will remain unitialized until a direct
++          // reference to it is made. This call makes sure that the PlatformMBeanServer will be in
++          // the set of MBeanServers reported by MBeanServerFactory.
++          // Issue 11143: This call initializes java.util.logging.LogManager. We should not call it
++          // before application has had a chance to configure custom log manager. This is needed for
++          // wildfly.
++          ManagementFactory.getPlatformMBeanServer();
++        },
++        discoveryDelay,
++        TimeUnit.MILLISECONDS);
+ 
+     exec.schedule(
+         new Runnable() {
 diff --git a/version.gradle.kts b/version.gradle.kts
-index fdf57bdbea..c38a2e00f3 100644
+index fdf57bdbea..1bd7ae7f60 100644
 --- a/version.gradle.kts
 +++ b/version.gradle.kts
 @@ -1,5 +1,5 @@
 -val stableVersion = "1.32.1"
 -val alphaVersion = "1.32.1-alpha"
-+val stableVersion = "1.32.1-adot2"
-+val alphaVersion = "1.32.1-adot2-alpha"
++val stableVersion = "1.32.1-adot3"
++val alphaVersion = "1.32.1-adot3-alpha"
 
  allprojects {
    if (findProperty("otel.stable") != "true") {

dependencyManagement/build.gradle.kts

@@ -27,7 +27,7 @@ data class DependencySet(val group: String, val version: String, val modules: Li
 val TEST_SNAPSHOTS = rootProject.findProperty("testUpstreamSnapshots") == "true"
 
 // This is the version of the upstream instrumentation BOM
-val otelVersion = "1.32.1-adot2"
+val otelVersion = "1.32.1-adot3"
 val otelSnapshotVersion = "1.33.0"
 val otelAlphaVersion = if (!TEST_SNAPSHOTS) "$otelVersion-alpha" else "$otelSnapshotVersion-alpha-SNAPSHOT"
 val otelJavaAgentVersion = if (!TEST_SNAPSHOTS) otelVersion else "$otelSnapshotVersion-SNAPSHOT"