Merge pull request #66 from wleepang/master

fix s3 project detection

Author: wleepang

docs/orchestration/nextflow/nextflow-overview.md

@@ -108,7 +108,7 @@ cd /opt/work/$GUID
 aws s3 sync --only-show-errors $NF_LOGSDIR/.nextflow .nextflow
 
 # stage workflow definition
-if [[ "$NEXTFLOW_PROJECT" =~ "^s3://.*" ]]; then
+if [[ "$NEXTFLOW_PROJECT" =~ ^s3://.* ]]; then
     aws s3 sync --only-show-errors --exclude 'runs/*' --exclude '.*' $NEXTFLOW_PROJECT ./project
     NEXTFLOW_PROJECT=./project
 fi

src/containers/nextflow/nextflow.aws.sh

@@ -51,7 +51,7 @@ cd /opt/work/$GUID
 aws s3 sync --only-show-errors $NF_LOGSDIR/.nextflow .nextflow
 
 # stage workflow definition
-if [[ "$NEXTFLOW_PROJECT" =~ "^s3://.*" ]]; then
+if [[ "$NEXTFLOW_PROJECT" =~ ^s3://.* ]]; then
     aws s3 sync --only-show-errors --exclude 'runs/*' --exclude '.*' $NEXTFLOW_PROJECT ./project
     NEXTFLOW_PROJECT=./project
 fi