Increasing timeout for chembl import beyond an hour.

Author: EC2 Default User

lib/baseline-stack.ts

@@ -135,7 +135,8 @@ export class BaselineStack extends cdk.Stack {
 
         loadChemblAssociation.addPropertyOverride('Parameters',{
             databaseSecretArn: [chemblDBSecret.secretArn],
-            databaseHostName: [chemblDb.dbInstanceEndpointAddress]
+            databaseHostName: [chemblDb.dbInstanceEndpointAddress],
+            executionTimeout: ['7200']
         });
 
 

scripts/ssmdoc.importchembl25.json

@@ -9,14 +9,21 @@
         "databaseHostName": {
           "type": "String",
           "description": "Hostname of the database server"
+        },
+        "executionTimeout": {
+          "type": "String",
+          "default": "7200",
+          "description": "(Optional) The time in seconds for a command to complete before it is considered to have failed. Default is 3600 (1 hour). Maximum is 172800 (48 hours).",
+          "allowedPattern": "([1-9][0-9]{0,3})|(1[0-9]{1,4})|(2[0-7][0-9]{1,3})|(28[0-7][0-9]{1,2})|(28800)"
         }
+
     },
     "mainSteps":[
       {
         "action":"aws:runShellScript",
         "name":"DownloadAndImportChembl25intoDatabase",
         "inputs":{
-            "timeoutSeconds":"7200",
+            "timeoutSeconds": "{{ executionTimeout }}",
             "runCommand": [
                 "sudo yum install jq -y",
                 "currentRegion=$(curl -s http://169.254.169.254/latest/dynamic/instance-identity/document|jq -r .region)",