Merge pull request #2850 from int-brain-lab/main

update IBL Nature publications

Author: berylrab

datasets/ibl-autism.yaml

@@ -0,0 +1,41 @@
+Name: IBL Neuropixels Brainwide Map on AWS
+Description: Electrophysiological recordings of mouse brain activity acquired during a decision making task in multiple autism mice models.
+Documentation: https://docs.internationalbrainlab.org/notebooks_external/2025_data_release_autism_noel.html
+Contact: [email protected]
+ManagedBy: "[International Brain Laboratory](https://www.internationalbrainlab.com)"
+UpdateFrequency: TBD
+Tags:
+  - aws-pds
+  - life sciences
+  - neuroscience
+  - neurophysiology
+  - open source software
+  - Mus musculus
+  - autism spectrum disorder
+License: CC-BY 4.0
+Resources:
+  - Description: Project data in public bucket
+    ARN: arn:aws:s3:::ibl-brain-wide-map-public
+    Region: us-east-1
+    Type: S3 Bucket
+DataAtWork:
+  Tutorials:
+    - Title: Intermediate Datasets and Analysis Code
+      URL: https://osf.io/fap2s/ and https://osf.io/fap2s/wiki/home/
+      AuthorName: Noel et al.
+    - Title: Download the public data via ONE
+      URL: https://docs.internationalbrainlab.org/notebooks_external/data_download.html
+      AuthorName: IBL Data Architecture Working Group
+      AuthorURL:  https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members
+    - Title: Find data associated with a release or publication
+      URL: https://docs.internationalbrainlab.org/notebooks_external/data_download.html#Find-data-associated-with-a-release-or-publication
+      AuthorName: IBL Data Architecture Working Group
+      AuthorURL: https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members
+    - Title: Loading Data
+      URL: https://docs.internationalbrainlab.org/loading_examples.html
+      AuthorName: IBL Data Architecture Working Group
+      AuthorURL:  https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members
+  Publications:
+    - Title: A common computational and neural anomaly across mouse models of autism
+      URL: https://doi.org/10.1038/s41593-025-01965-8
+      AuthorName: Noel et al.

datasets/ibl-behaviour.yaml

@@ -1,6 +1,6 @@
 Name: IBL Behavioral Data on AWS
 Description: Behavioral data of mice performing a decision-making task, associated with 2020 publication of the IBL.
-Documentation: https://int-brain-lab.github.io/iblenv/notebooks_external/data_release_behavior.html
+Documentation: https://docs.internationalbrainlab.org/notebooks_external/2021_data_release_behavior.html
 Contact: [email protected]
 ManagedBy: "[International Brain Laboratory](https://www.internationalbrainlab.com)"
 UpdateFrequency: TBD
@@ -29,19 +29,19 @@ DataAtWork:
       AuthorName: IBL Data Architecture Working Group
       AuthorURL: https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members
     - Title: Download the public data via ONE
-      URL: https://int-brain-lab.github.io/iblenv/notebooks_external/data_download.html
+      URL: https://docs.internationalbrainlab.org/notebooks_external/data_download.html
       AuthorName: IBL Data Architecture Working Group
       AuthorURL:  https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members
     - Title: Find data associated with a release or publication
-      URL: https://int-brain-lab.github.io/iblenv/notebooks_external/data_download.html#Find-data-associated-with-a-release-or-publication
+      URL: https://docs.internationalbrainlab.org/notebooks_external/data_download.html#Find-data-associated-with-a-release-or-publication
       AuthorName: IBL Data Architecture Working Group
       AuthorURL: https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members
     - Title: Loading Data
-      URL: https://int-brain-lab.github.io/iblenv/loading_examples.html#
+      URL: https://docs.internationalbrainlab.org/loading_examples.html
       AuthorName: IBL Data Architecture Working Group
       AuthorURL:  https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members
   Publications:
     - Title: Standardized and reproducible measurement of decision-making in mice
       URL: https://doi.org/10.7554/eLife.63711
       AuthorName: International Brain Laboratory et al.
-      AuthorURL: www.internationalbrainlab.com
+      AuthorURL: www.internationalbrainlab.com

datasets/ibl-brain-wide-map.yaml

@@ -1,6 +1,6 @@
 Name: IBL Neuropixels Brainwide Map on AWS
-Description: Electrophysiological recordings of mouse brain activity acquired using Neuropixels probes and accompanying behavioral data.
-Documentation: https://int-brain-lab.github.io/iblenv/notebooks_external/data_release_brainwidemap.html
+Description: Electrophysiological recordings of mouse brain activity acquired during a decision making task.
+Documentation: https://docs.internationalbrainlab.org/notebooks_external/2025_data_release_brainwidemap.html
 Contact: [email protected]
 ManagedBy: "[International Brain Laboratory](https://www.internationalbrainlab.com)"
 UpdateFrequency: TBD
@@ -40,15 +40,24 @@ DataAtWork:
       URL: https://colab.research.google.com/drive/1th3MRZGHMSaeAvGmKGJQ84rBk8eEI4Fu
       AuthorName: IBL Data Architecture Working Group
       AuthorURL:  https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members
-    - Title: Download the public datasets
-      URL: https://int-brain-lab.github.io/iblenv/notebooks_external/data_download.html
+    - Title: Download the public data via ONE
+      URL: https://docs.internationalbrainlab.org/notebooks_external/data_download.html
       AuthorName: IBL Data Architecture Working Group
       AuthorURL:  https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members
     - Title: Find data associated with a release or publication
-      URL: https://int-brain-lab.github.io/iblenv/notebooks_external/data_download.html#Find-data-associated-with-a-release-or-publication
+      URL: https://docs.internationalbrainlab.org/notebooks_external/data_download.html#Find-data-associated-with-a-release-or-publication
       AuthorName: IBL Data Architecture Working Group
       AuthorURL: https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members
     - Title: Loading Data
-      URL: https://int-brain-lab.github.io/iblenv/loading_examples.html#
+      URL: https://docs.internationalbrainlab.org/loading_examples.html
       AuthorName: IBL Data Architecture Working Group
       AuthorURL:  https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members
+  Publications:
+    - Title: A brain-wide map of neural activity during complex behaviour
+      URL: https://doi.org/10.1038/s41586-025-09235-0
+      AuthorName: International Brain Laboratory et al.
+      AuthorURL: www.internationalbrainlab.com
+    - Title: Brain-wide representations of prior information in mouse decision-making
+      URL: https://doi.org/10.1038/s41586-025-09226-1
+      AuthorName: International Brain Laboratory et al.
+      AuthorURL: www.internationalbrainlab.com

datasets/ibl-reproducible-ephys.yaml

@@ -1,6 +1,6 @@
 Name: IBL Neuropixels Reproducible Ephys Data on AWS
 Description: Electrophysiological recordings acquired using Neuropixels probes in different mice and labs, targeting the same brain locations (including posterior parietal cortex, hippocampus, and thalamus).
-Documentation: https://int-brain-lab.github.io/iblenv/notebooks_external/data_release_repro_ephys.html
+Documentation: https://docs.internationalbrainlab.org/notebooks_external/2024_data_release_repro_ephys.html
 Contact: [email protected]
 ManagedBy: "[International Brain Laboratory](https://www.internationalbrainlab.com)"
 UpdateFrequency: TBD
@@ -28,20 +28,24 @@ DataAtWork:
       AuthorName: IBL Data Architecture Working Group
       AuthorURL:  https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members
   Tutorials:
-    - Title: Download the public datasets
-      URL: https://int-brain-lab.github.io/iblenv/notebooks_external/data_download.html
+    - Title: Compute the RIGOR metrics
+      URL: https://github.com/int-brain-lab/paper-reproducible-ephys/blob/2397f2cf5b92689f39e94ef7d8f76f0a7e2bd2a7/RIGOR_script.ipynb
+      AuthorName: IBL Data Architecture Working Group
+      AuthorURL: https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members
+    - Title: Download the public data via ONE
+      URL: https://docs.internationalbrainlab.org/notebooks_external/data_download.html
       AuthorName: IBL Data Architecture Working Group
       AuthorURL:  https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members
     - Title: Find data associated with a release or publication
-      URL: https://int-brain-lab.github.io/iblenv/notebooks_external/data_download.html#Find-data-associated-with-a-release-or-publication
+      URL: https://docs.internationalbrainlab.org/notebooks_external/data_download.html#Find-data-associated-with-a-release-or-publication
       AuthorName: IBL Data Architecture Working Group
       AuthorURL: https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members
     - Title: Loading Data
-      URL: https://int-brain-lab.github.io/iblenv/loading_examples.html#
+      URL: https://docs.internationalbrainlab.org/loading_examples.html
       AuthorName: IBL Data Architecture Working Group
       AuthorURL:  https://github.com/orgs/int-brain-lab/teams/data-architecture-wg/members
   Publications:
-    - Title: Reproducibility of in-vivo electrophysiological measurements in mice
-      URL: https://doi.org/10.1101/2022.05.09.491042
+    - Title: Reproducibility of in vivo electrophysiological measurements in mice
+      URL: https://doi.org/10.7554/eLife.100840.1
       AuthorName: International Brain Laboratory et al.
-      AuthorURL: www.internationalbrainlab.com
+      AuthorURL: www.internationalbrainlab.com